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In this study, mycological examination were conducted on different samples from human, animals and poultry in El-Fayoum and Beni-Suef governorates, Egypt in the period from January to June 2013. The antifungal activities of thyme, clove and cinnamon oils against the recovered fungal isolates were tested using agar dilution method. A total of 209 samples were collected (including vaginal swabs from 18 women, 82 cows and 9 buffaloes beside 100 swabs from broiler chickens; 20 crops and 80 proventriculus). Eighty nine fungal isolates were recovered (40 mold and 49 yeast isolates). Eleven (61.1%) fungal isolates were recovered from women; of which 1 isolate was A. flavus and 10 were Candida species while 39 (42.9%) fungal isolates were recovered from animals; of which 36 were molds and 3 were C. albicans. In broiler chickens, 39 (39%) fungal isolates were recovered; of which 36 were yeast; 34 Candida species and 2 Cryptococcus species and 3 were molds; 2 A. niger and 1 A. flavus. PCR assay using oligonucleotide primer that amplifying 172bp fragment in SAP3 gene of C. albicans confirmed morphological, biochemical and biological identification of C. albicans. The antifungal activities of the tested essential oils against the recovered fungi revealed that thyme oil completely inhibited the growth of different fungal isolates at concentrations of 0.25, 0.5 and 1%. Clove and cinnamon oils completely inhibited the growth of different fungal isolates at a concentration of 6%.

Avian colibacillosis is one of the most important diseases of chickens resulting in significant economic losses as well as high morbidity and mortality. In the current study, the prevalence of avian colibacillosis was studied in different farms of broiler chickens in Beni Suef, EL-Minia, El-Fayoum, Assiut and Sohag Governorates. A total of 300 pooling samples were collected aseptically from heart blood as well as the affected organs including air sacs, pericardial sac, and liver of slaughtered diseased and freshly dead broiler chickens. Bacteriological examination of the collected samples showed that a total number of 80 E. coli isolates were recovered with an overall prevalence of 26.7. The highest prevalence was recorded in El-Fayoum (33.3%) followed by El-Minia (25%), Beni Suef and Assiut (22.5% for each) while the lowest prevalence was in Sohag (17.5%). The invitro antimicrobial susceptibility testing revealed that E. coli isolates showed high sensitivity to colistin sulphate only (70%). Meanwhile, high resistances were recorded against other antimicrobials including amoxicillin (97.5%), cefotaxime sodium and florfenicol (95% for each), apramycin, ciprofloxacin and gentamicin (92.5% for each), streptomycin (90%), enrofloxacin (87.5%), trimethoprim-sulphamethoxazol and doxycycline HCl (77.5% for each). All E. coli isolates were MDR (100%). PCR was applied on 10 MDR E. coli isolates to detect the 3 resistance-associated genes (qnrA, tetA and aac(6′)-Ib-cr and 5 virulence-associated genes (iutA, hly, sta, lt and astA). The results showed that all the tested isolates (100%) harbored qnrA, tetA, iutA and astA genes meanwhile aac(6′)-Ib-cr, hly, sta and lt genes were not detected in any isolate.

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Article info Coagulase negative Staphylococci are the most prevalent cause of bovine subclinical mastitis. The current study were designed to study their occurrence, antibiogram and their ability to form biofilms. A total number of 95 CNS isolates were recovered from 400 lactating. S. xylosus (36.84%), S. chromogenes (12.63%), S. epidermidis (10.53%), S. saprophyticus (8.42%), S. haemolyticus (7.38%) were the most common recovered species. Disk diffusion method against 14 antimicrobials discs was used to detect their antibiogram. 100% were sensitive to Imipenem, 96.84% were sensitive to Enrofloxacin, 85.26% to Chlramphenicol and 84.21% to Vancomycin. But, 95.79% were resistant to Ampicillin, 77.9% resistant to Cefoxitin, 35.8% resistant to Cefuroxime, 32.63% resistant to Amoxycillin and 18.95% resistant to Clindamycin. Cultivation on Congo Red Agar (CRA) was carried out to detect biofilm formation. 47.37% were positive and S. epidermidis was the most biofilm positive species on CRA by the percentage of 70%. Haemolysins were studied by cultivating CNS on sheep blood agar. 25.26% were β-haemolytic, 71.57% (n=68) were γhaemolytic and 3.15% were αhaemolytic.

Although normally regarded harmless commensals, enterococci may cause a range of different infections in humans, including urinary tract infections, sepsis, and endocarditis. The acquisition of vancomycin resistance by enterococci (VRE) has seriously affected the treatment and infection control of these organisms. VRE are frequently resistant to all antibiotics that are effective treatment for vancomycin-susceptible enterococci, which leaves clinicians treating VRE infections with limited therapeutic options. With VRE emerging as a global threat to public health, we aimed to isolate, identify enterococci species from tilapia and their resistance to van-mediated glycopeptide (vanA and vanC) as well as the presence of enterococcal surface protein (esp) using conventional and molecular methods. The cultural, biochemical (Vitek 2 system) and polymerase chain reaction results revealed eight Enterococcus isolates from the 80 fish samples (10%) to be further identified as E. faecalis (6/8, 75%) and E gallinarum (2/8, 25%). Intraperitoneal injection of healthy Nile tilapia with the eight Enterococcus isolates caused significant morbidity (70%) within 3 days and 100% mortality at 6 days post-injection with general signs of septicemia. All of the eight Enterococcus isolates were found to be resistant to tetracycline. The 6/6 E. faecalis isolates were susceptible for penicillin, nitrofurantoin, gentamicin, and streptomycin. On the other hand 5/6 were susceptible for ampicillin, vancomycin, chloramphenicol, and ciprofloxacin. The two isolates of E. gallinarum were sensitive to rifampicin and ciprofloxacin and resistant to vancomycin, chloramphenicol, and erythromycin. Molecular characterization proved that they all presented the prototypic vanC element. On the whole, one of the two vancomycin resistance gene was present in 3/8 of the enterococci isolates, while the esp virulence gene was present in 1/8 of the enterococci isolates. The results in this study emphasize the potential role that aquatic environments are correlated to proximity to anthropogenic activities in determining the antimicrobial resistance patterns of Enterococcus spp. recovered from fish in the river Nile in Giza, Elmounib, Egypt as a continuation of our larger study on the reservoirs of antibiotic resistance in the environment.

This study aimed to detect the virulent Salmonella serovars (including ESBLs producing) isolated from broiler chickens and humans. Three hundred broilers and sixty human fecal samples were bacteriologically examined. Thirty (10%) and fourteen (23.4%) Salmonella isolates were recovered from broiler and human samples, respectively. The most predominant serovar was S. enteritidis and S. typhimurium. All Salmonella isolates were confirmed by conventional PCR-based invA and ompA genes. Multidrug resistant (MDR) isolates were screened for the detection of adrA and csgD biofilm-associated genes, which were found in all isolated serovars except one S. typhimurium and 2 S. infantis of chicken isolates that were devoid of the adrA gene. Moreover, MDR isolates were screened for detection of seven resistance genes including ESBLs and other classes of resistance genes. Chicken isolates harbored blaTEM, int1, blaCTX and qnrS genes as 100, 27.8, 11.1 and 11.1%, respectively, while all human isolates harbored blaTEM, int1 and int3 genes. The genetic correlations between virulent Salmonella serovars (including antimicrobial resistance) avian and human origins were compared. In conclusion, the high prevalence of virulent ESBL producing Salmonella serovars in broilers and humans with genetic correlations between them might be zoonotic and public health hazards.