Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. Destructive AGB measurements, although accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield precise 3D structural measurements of vegetation quite rapidly. Recent advances have led to the successful application of TLS and SfM in woody biomass estimation, but application in natural grassland systems remains largely untested. The potential of these techniques for AGB estimation is examined considering 11 grass plots with a range of biomass in South Dakota, USA. Volume metrics extracted from the TLS and SfM 3D point clouds, and also conventional disc pasture meter settling heights, were compared to destructively harvested AGB total (grass and litter) and AGB grass plot measurements. Although the disc pasture meter was the most rapid method, it was less effective in AGB estimation (AGB grass r 2 = 0.42, AGB total r 2 = 0.32) than the TLS (AGB grass r 2 = 0.46, AGB total r 2 = 0.57) or SfM (AGB grass r 2 = 0.54, AGB total r 2 = 0.72) which both demonstrated their utility for rapid AGB estimation of grass systems.

A new wave of terrestrial lidar scanners, optimized for rapid scanning and portability, such as the Compact Biomass Lidar (CBL), enable and improve observations of structure across a range of important ecosystems. We performed studies with the CBL in temperate and tropical forests, caves, salt marshes and coastal areas subject to erosion. By facilitating additional scanning points, and therefore view angles, this new class of terrestrial lidar alters observation coverage within samples, potentially reducing uncertainty in estimates of ecosystem properties. The CBL has proved competent at reconstructing trees and mangrove roots using the same cylinder-based Quantitative Structure Models commonly utilized for data from more capable instruments (Raumonen et al. 2013). For tropical trees with morphologies that challenge standard reconstruction techniques, such as the buttressed roots of Ceiba trees and the multiple stems of strangler figs, the CBL was able to provide the versatility and the speed of deployment needed to fully characterize their unique features. For geomorphological features, the deployment flexibility of the CBL enabled sampling from optimal view-angles, including from a novel suspension system for sampling salt marsh creeks. Overall, the practical aspects of these instruments, which improve deployment logistics, and therefore data acquisition rate, are shown to be emerging capabilities, greatly increasing the potential for observation, particularly in highly temporally dynamic, inaccessible and geometrically complex ecosystems. In order to better analyze information quality across these diverse and challenging ecosystems, we also provide a novel and much-needed conceptual framework, the microstate model, to characterize and mitigate uncertainties in terrestrial lidar observations.

The hemlock woolly adelgid (HWA; Adelges tsugae) is an invasive insect infestation that is spreading into the forests of the northeastern United States, driven by the warmer winter temperatures associated with climate change. The initial stages of this disturbance are difficult to detect with passive optical remote sensing, since the insect often causes its host species, eastern hemlock trees (Tsuga canadensis), to defoliate in the midstory and understory before showing impacts in the overstory. New active remote sensing technologies-such as the recently launched NASA Global Ecosystem Dynamics Investigation (GEDI) spaceborne lidar-can address this limitation by penetrating canopy gaps and recording lower canopy structural changes. This study explores new opportunities for monitoring the HWA infestation with airborne lidar scanning (ALS) and GEDI spaceborne lidar data. GEDI waveforms were simulated using airborne lidar datasets from an HWA-infested forest plot at the Harvard Forest ForestGEO site in central Massachusetts. Two airborne lidar instruments, the NASA G-LiHT and the NEON AOP, overflew the site in 2012 and 2016. GEDI waveforms were simulated from each airborne lidar dataset, and the change in waveform metrics from 2012 to 2016 was compared to field-derived hemlock mortality at the ForestGEO site. Hemlock plots were shown to be undergoing dynamic changes as a result of the HWA infestation, losing substantial plant area in the middle canopy, while still growing in the upper canopy. Changes in midstory plant area (PAI 11-12 m above ground) and overall canopy permeability (indicated by RH10) accounted for 60% of the variation in hemlock mortality in a logistic regression model. The robustness of these structure-condition relationships held even when simulated waveforms were treated as real GEDI data with added noise and sparse spatial coverage. These results show promise for future disturbance monitoring studies with ALS and GEDI lidar data.

Terrestrial laser scanning combining both near-infrared (NIR) and shortwave-infrared (SWIR) wavelengths can readily distinguish broad leaves from trunks, branches, and ground surfaces. Merging data from the 1548 nm SWIR laser in the Dual-Wavelength Echidna ® Lidar (DWEL) instrument in engineering trials with data from the 1064 nm NIR laser in the Echidna ® Validation Instrument (EVI), we imaged a deciduous forest scene at the Harvard Forest, Petersham, Massachusetts, and showed that trunks are about twice as bright as leaves at 1548 nm, while they have about equal brightness at 1064 nm. The reduced return of leaves in the SWIR is also evident in merged point clouds constructed from the two laser scans. This distinctive difference between leaf and trunk reflectance in the two wavelengths validates the principle of effective discrimination of leaves from other targets using the new dual-wavelength instrument.

Tracking the rates and mechanisms of canopy damage and recovery following Hurricane Maria using multitemporal lidar data SHORT TITLE: Forest canopy damage and recovery after Maria

Radiometric calibration of the Dual-Wavelength Echidna® Lidar (DWEL), a full-waveform terrestrial laser scanner with two simultaneously-pulsing infrared lasers at 1064 nm and 1548 nm, provides accurate dual-wavelength apparent reflectance (ρapp), a physically-defined value that is related to the radiative and structural characteristics of scanned targets and independent of range and instrument optics and electronics. The errors of ρapp are 8.1% for 1064 nm and 6.4% for 1548 nm. A sensitivity analysis shows that ρapp error is dominated by range errors at near ranges, but by lidar intensity errors at far ranges. Our semi-empirical model for radiometric calibration combines a generalized logistic function to explicitly model telescopic effects due to defocusing of return signals at near range with a negative exponential function to model the fall-off of return intensity with range. Accurate values of ρapp from the radiometric calibration improve the quantification of vegetation structure, facilitate the comparison and coupling of lidar datasets from different instruments, campaigns or wavelengths and advance the utilization of bi- and multi-spectral information added to 3D scans by novel spectral lidars.

Contemporary terrestrial laser scanning (TLS) is being used widely in forest ecology applications to examine ecosystem properties at increasing spatial and temporal scales. Harvard Forest (HF) in Petersham, MA, USA, is a long-term ecological research (LTER) site, a National Ecological Observatory Network (NEON) location and contains a 35 ha plot which is part of Smithsonian Institution's Forest Global Earth Observatory (ForestGEO). The combination of long-term field plots, eddy flux towers and the detailed past historical records has made HF very appealing for a variety of remote sensing studies. Terrestrial laser scanners, including three pioneering research instruments: the Echidna Validation Instrument, the Dual-Wavelength Echidna Lidar and the Compact Biomass Lidar, have already been used both independently and in conjunction with airborne laser scanning data and forest census data to characterize forest dynamics. TLS approaches include three-dimensional reconstructions of a plot over time, establishing the impact of ice storm damage on forest canopy structure, and characterizing eastern hemlock (Tsuga canadensis) canopy health affected by an invasive insect, the hemlock woolly adelgid (Adelges tsugae). Efforts such as those deployed at HF are demonstrating the power of TLS as a tool for monitoring ecological dynamics, identifying emerging forest health issues, measuring forest biomass and capturing ecological data relevant to other disciplines. This paper highlights various aspects of the ForestGEO plot that are important to current TLS work, the potential for exchange between forest ecology and TLS, and emphasizes the strength of combining TLS data with long-term ecological field data to create emerging opportunities for scientific study.

In this study, we introduce metaproperty analysis of terrestrial laser scanner (TLS) data, and demonstrate its application through several ecological classification problems. Metaproperty analysis considers pulse level and spatial metrics derived from the hundreds of thousands to millions of lidar pulses present in a single scan from a typical contemporary instrument. In such large aggregations, properties of the populations of lidar data reflect attributes of the underlying ecological conditions of the ecosystems.In this study, we provide the Metaproperty Classification Model to employ TLS metaproperty analysis for classification problems in ecology. We applied this to a proof‐of‐concept study, which classified 88 scans from rooms and forests with 100% accuracy, to serve as a template.We then applied the Metaproperty Classification Model in earnest, to separate scans from temperate and tropical forests with 97.09% accuracy (N = 224), and to classify scans from inland and coastal tropical rainforests with 84.07% accuracy (N = 270).The results demonstrate the potential for metaproperty analysis to identify subtle and important ecosystem conditions, including diseases and anthropogenic disturbances. Metaproperty analysis serves as an augmentation to contemporary object reconstruction applications of TLS in ecology, and can characterize regional heterogeneity.