A collection of 96 female Turkish fig (Ficus carica L.) accessions was studied to elucidate genetic structure and estimate diversity and genetic similarity distribution among the female figs present in Turkish genetic resources, using 157 molecular genome markers including 129 sequence-related amplified polymorphisms, 21 random amplified polymorphic DNAs, and 7 simple-sequence repeats. The plant samples mainly included Turkish fig collections selected throughout the country over the course of a half-century. Neighbor-joining analysis revealed continuous dissimilarity range, and it was difficult to classify figs into distinct groups. The principle component analysis produced similar results. The analysis of molecular variance indicated that 95 and 93% of genetic variation were explained by within geographic origins and similar fruit rind color, respectively. Sub-structuring Bayesian analysis assigned the 96 female figs into four sub-populations, and indicated that they were highly related. The corrected allelic pairwise distances among the six geographic origins were less than 5%. This study suggests that geography- and color-based groups were not genetically distinct among the Turkish figs.
In most dioecious plants, distinguishing male and female progenies is not possible until flowering or fruiting stage. The fig (Ficus carica L.) is such a plant where distinguishing male and female plants at the seedling stage can accelerate fig-breeding programs. An orthologue of RAN1 loci was reported to be associated with sex determination in fig (Mori et al., 2017). The objective of this study is to validate this locus on Turkish fig germplasm collection and F1 population obtained from a cross between female genotypes ‘Bursa Siyahi’ and male genotype ‘Ak Ilek’. A total of 144 genotypes from germplasm collection and 115 F1 individuals were tested with CAPS (cleaved amplified polymorphic sequences) marker following the Mori et al. (2017). The loci produced a 315bp amplification product from all genotypes. PciI digestion of PCR products resulted in 100% concordance between phenotypes and molecular tests. On the other hand, HpyCH4IV enzyme digestion of 8 female genotypes resulted in false negatives among the tested materials. Therefore, despite overall results show that the locus is suitable for gender selection of plants at the seedling stage in the breeding programs, care should be taken when HpyCH4IV enzyme is to be employed for CAPS assay.
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In press - Online First. Article has been peer reviewed, accepted for publication and published online without pagination. It will receive pagination when the issue will be ready for publishing as a complete number (Volume 47, Issue 3, 2019). The article is searchable and citable by Digital Object Identifier (DOI). DOI link will become active after the article will be included in the complete issue.
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The aim of this study was to diagnos bacterial speck of tomato (Pseudomonas syringae pv. tomato) pathogen using biochemical and molecular methods and to determine genetical diversity of Pst isolates by using ISSR and SRAP molecular markers. In the study, survey studies were carried out in West Mediterranean Region to collect bacterial pathogen of tomato (Pst). 10 Pst isolates were collected during survey studies. After isolation, the pathogen was diagnosed with biochemical and molecular diagnostic methods. Besides, genetic diversities of Pst isolates were determined using ISSR and SRAP molecular markers. As a result, bacterial speck of tomato was seen depending on the climatic conditions at the region and Pst was successfully detected by using classical and molecular methods. ISSR and SRAP markers were successively used for analyzing genetic diversity of Pst isolates and these primers could be efficiently used to separate isolates of disease agent.
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