Two of the unsolved, important questions about epigenetics are: do histone arginine demethylases exist, and is the removal of histone tails by proteolysis a major epigenetic modification process? Here, we report that two orphan Jumonji C domain (JmjC)-containing proteins, JMJD5 and JMJD7, have divalent cationdependent protease activities that preferentially cleave the tails of histones 2, 3, or 4 containing methylated arginines. After the initial specific cleavage, JMJD5 and JMJD7, acting as aminopeptidases, progressively digest the C-terminal products. JMJD5-deficient fibroblasts exhibit dramatically increased levels of methylated arginines and histones. Furthermore, depletion of JMJD7 in breast cancer cells greatly decreases cell proliferation. The protease activities of JMJD5 and JMJD7 represent a mechanism for removal of histone tails bearing methylated arginine residues and define a potential mechanism of transcription regulation.histone tail | arginine methylation | clipping | JMJD5/7

Livestock grazing is an important component and driver of biodiversity in grassland ecosystems. While numerous studies and a few meta-analyses had been conducted on the response of single taxon diversity to grazing in grasslands, a synthesis of how multi-taxa diversity is affected has been largely missing, especially reflecting its changes along a grazing intensity gradient. We performed a comprehensive meta-analyses of 116 published studies on the species richness (SR) and Shannon −Wiener index (H′) of plants, arthropods, and microbes to examine the response of biodiversity to grazing intensity in temperate grasslands globally. This quantitative assessment showed that the response of SR and H′ to grazing intensity agreed with the intermediate disturbance hypothesis in grasslands; SR and H′ increased with light and moderate grazing intensities, while they decreased at heavy intensity. In addition, plant SR increased markedly with light and moderate grazing and declined with heavy grazing intensity; however, H′ increased at light intensity and declined at moderate and heavy intensities. Moreover, the SR and H′ of microbes were enhanced at light and moderate grazing and were significantly reduced with heavy intensity. The SR and H′ of arthropods monotonously declined with increasing grazing intensity. Importantly, structural equation modeling showed that grazing resulted in enhanced plant SR mainly through its negative effects on plant biomass. Grazing had negative effects on plant coverage and arthropod abundance so that arthropod SR declined with increased grazing intensity. Moreover, increased grazing intensity caused an increase in soil pH, decrease in soil moisture, and then a decrease in microbe SR. Our findings confirm that different taxa exhibit diverse responses to changes in grazing intensity, and the way that grazing intensity affects diversity also varied with different taxa. We strongly recommend considering the requirements of multi-taxa diversity when applying grazing management and including arthropods and microbes in monitoring schemes.

Plant carbon (C) and nitrogen (N) stoichiometry play an important role in the maintenance of ecosystem structure and function. To decipher the influence of changing environment on plant C and N stoichiometry at the subcontinental scale, we studied the shoot and root C and N stoichiometry in two widely distributed and dominant genera along a 2,200‐km climatic gradient in China's grasslands. Relationships between C and N concentrations and soil climatic variables factors were studied. In contrast to previous theory, plant C concentration and C:N ratios in both shoots and roots increased with increasing soil fertility and decreased with increasing aridity. Relative N allocation shifted from soils to plants and from roots to shoots with increasing aridity. Changes in the C:N ratio were associated with changes in N concentration. Dynamics of plant C concentration and C:N ratios were mainly caused by biomass reallocation and a nutrient dilution effect in the plant‐soil system. Our results suggest that the shifted allocation of C and N to different ecosystem compartments under a changing environment may change the overall use of these elements by the plant‐soil system.

Phenology is one of the most sensitive processes of plant in response to global change. Anthropogenic activities have considerably increased nitrogen (N) deposition, which significant affects plant phenology. Although numerous individual studies have been conducted, it remains controversial how N addition affects phenological stages, and a comprehensive understanding of how plant phenology responds to external N inputs remains elusive. To reconcile the differences, we conducted a meta‐analysis of 117 species to examine the responses of plant phenology to N addition in terrestrial ecosystems, and assessed variations in their responses in relation to ecosystem types, functional groups, and environmental conditions. Our results showed that plant phenology changed significantly after N addition, and phenology time delayed and phenology duration shortened significantly across all biomes except fruiting duration, but varied with biome types. The phenology change in cropland was more dramatical than in grassland after N addition, even in opposite directions. The response of phenological stages to N addition was consistent in two pollination types except the flowering time, the flowering time had no change in anemophilous but significantly delayed in entomophilous. In addition, the response of phenology to N addition was discrepancy among functional groups, the phenology time advanced and duration shortened in sedge, while phenology time delayed and duration shortened in other groups, and the phenology change in legume was larger than grass and forbs. We also found that environmental factors had little effects on the response of plant phenology to N addition, but significant correlation was found between the response ratios of different phenological stages. Our study suggested that phenology was sensitive to N deposition at many phenological stages, and changes in phenology may be smaller with community biodiversity increasing at ecosystem level.

Rubisco (ribulose-1, 5-bisphosphate carboxylase/oxygenase), a key enzyme of photosynthetic CO2 fixation, is one of the most abundant proteins in both higher plants and algae. In this study, the differential expression of Rubisco in sporophytes and gametophytes of four seaweed species — Porphyra yezoensis, P. haitanensis, Bangia fuscopurpurea (Rhodophyte) and Laminaria japonica (Phaeophyceae) — was studied in terms of the levels of transcription, translation and enzyme activity. Results indicated that both the Rubisco content and the initial carboxylase activity were notably higher in algal gametophytes than in the sporophytes, which suggested that the Rubisco content and the initial carboxylase activity were related to the ploidy of the generations of the four algal species.

DNA methylation plays a critical role in the regulation of gene expression. Most studies of DNA methylation have been performed in herbaceous plants, and little is known about the methylation patterns in tree genomes. In the present study, we generated a map of methylated cytosines at single base pair resolution for Betula platyphylla (white birch) by bisulfite sequencing combined with transcriptomics to analyze DNA methylation and its effects on gene expression. We obtained a detailed view of the function of DNA methylation sequence composition and distribution in the genome of B. platyphylla. There are 34,460 genes in the whole genome of birch, and 31,297 genes are methylated. Conservatively, we estimated that 14.29% of genomic cytosines are methylcytosines in birch. Among the methylation sites, the CHH context accounts for 48.86%, and is the largest proportion. Combined transcriptome and methylation analysis showed that the genes with moderate methylation levels had higher expression levels than genes with high and low methylation. In addition, methylated genes are highly enriched for the GO subcategories of binding activities, catalytic activities, cellular processes, response to stimulus and cell death, suggesting that methylation mediates these pathways in birch trees.

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Aim Planted forests are becoming increasingly common world‐wide for a variety of reasons, including water conservation and carbon sequestration, although the effects of tree plantations on biodiversity are unclear with respect to whether planted ecosystems are “green deserts” or valuable habitats for biodiversity. Location Global. Time period 1980–2020. Taxa studied Flora, fauna and microorganisms. Methods By conducting a meta‐analysis of 361 observations from 138 sites world‐wide, we explored the global patterns and associated drivers of biodiversity responding to tree plantations by comparing biodiversity levels in plantations and adjacent habitats (primary or secondary forests). Results Overall, the biodiversity (species richness) and abundance across multitrophic levels in tree plantations were lower than those in primary forests, reached similar values to secondary succession, but varied with plantation and management regimes. Specifically, the biodiversity across multitrophic levels in reforestation was higher than that in afforestation; the biodiversity in mixed, native species and unmanaged plantations was higher than that in monoculture, exotic species and managed plantations. The diversity of vertebrates, invertebrates and plants in reforestation was lower than that in primary forests, whereas belowground biodiversity in reforestation showed no difference from primary forests. Invertebrate diversity in reforestation was lower than that in secondary succession, whereas plant diversity was higher than that in secondary succession. Moreover, the biodiversity in reforestation increased with reforestation age. Furthermore, structural equation models showed that aboveground faunal diversity in reforestation was driven by canopy coverage and plant diversity and that reforestation affected belowground biodiversity mainly by changing soil organic carbon. Main conclusions Our findings suggest that reforestation by planting mixed native species will be more beneficial to biodiversity. We reveal that biodiversity in intensively managed plantations is significantly lower than that in restoration‐oriented plantations. We highlight that primary forests are not replaceable, but that planted forests might be a reliable way to restore biodiversity rapidly.