Nutritional benefits of cultivated oat (Avena sativa L., 2n = 6x = 42, AACCDD) are well recognized; however, seed protein levels are modest and resources for genetic improvement are scarce. The wild tetraploid, A. magna Murphy et Terrell (syn A. maroccana Gdgr., 2n = 4x = 28, CCDD), which contains approximately 31% seed protein, was hybridized with cultivated oat to produce a domesticated A. magna. Wild and cultivated accessions were crossed to generate a recombinant inbred line (RIL) population. Although these materials could be used to develop domesticated, high-protein oat, mapping and quantitative trait loci introgression is hindered by a near absence of genetic markers. Objectives of this study were to develop high-throughput, A. magna-specific markers; generate a genetic linkage map based on the A. magna RIL population; and map genes controlling oat domestication. A Diversity Arrays Technology (DArT) array derived from 10 A. magna genotypes was used to generate 2,688 genome-specific probes. These, with 12,672 additional oat clones, produced 2,349 polymorphic markers, including 498 (21.2%) from A. magna arrays and 1,851 (78.8%) from other Avena libraries. Linkage analysis included 974 DArT markers, 26 microsatellites, 13 SNPs, and 4 phenotypic markers, and resulted in a 14-linkage-group map. Marker-to-marker correlation coefficient analysis allowed classification of shared markers as unique or redundant, and putative linkage-group-to-genome anchoring. Results of this study provide for the first time a collection of high-throughput tetraploid oat markers and a comprehensive map of the genome, providing insights to the genome ancestry of oat and affording a resource for study of oat domestication, gene transfer, and comparative genomics.
In recent years, mapping populations have provided improvements for oat genomic researches. A two-year study was conducted in East-Mediterranean conditions using Ogle1040/TAM O-301 pure-line mapping population including 136 individuals and parents. Stem diameter (SD), plant height (PH), panicle length (PL), vegetative period (VP), grain filling period (GFP), days to maturity (DM), grain number per panicle (GNP), grain weight per panicle (GWP), thousand kernel weight (TKW) and grain yield (GY) were investigated in 2014 and 2015 cropping seasons in Kahramanmaras. All the investigated traits were significantly different for years (p<0.01) and genotypes (p<0.05 and p<0.01) except SD and GNP. Genotype x year (G x Y) interaction was significant for PL, VP, GFP, DM and GY (p<0.01). In the first year, the average GY per row was 227.6 g, whilst it was 184.5 g in the second year. In terms of GY, the parents Ogle 1040 and TAM O-301 showed lower performance (154.5 and 111.5 g/row, respectively) compared to Ogle1040/TAM O-301 (OT) population average (206 g/row). OT129 genotype had the highest GY with 360 g/row. Principal component (PC) factor analysis yielded 10 PC explaining 100% of total variance in the data and the chi-square values of the PC1 to PC9 were found significant. According to PC biplot analysis, genotypes with high GY, TKW, GNP, GWP, PL and GFP were located throughout the right quadrants whereas the genotypes with high VP, DM and SD were located throughout the left quadrants. The relationships between PH × GY, GWP × GNP and GWP × TKW were positive and significant.
In recent years, oat plant especially for hay yield is on demand in Turkey. In this study, 167 oat landraces originated from Turkey were evaluated for germination and some early seedling stage traits and genotyped by 6K SNP Chip assay to detect candidate markers using association mapping analysis. Principal component analysis (PCA) were also performed to determine relationships among investigated traits. The variation in local oat genotypes for germination and other investigated traits was found significant at the 5% significance level, except for germination rate (GR). The values for germination rate was found between 52-76% and 52-100% for germination ratio, while 12.33 to 45 mm for coleoptile length and 8 to 21 mm for radicle length. On the other hand, plumula length varied between 2 to 28.45 mm and 1301.33 to 5494.40 for seed vigor index. In the research, PC1 and PC2 value was found 41.5% and 21.5%, respectively, explaining the 63% of the total variation. Germination rate and germination ratio (GP) were positively and significantly correlated with the other investigated traits. According to the results of the association mapping analysis a total number of 43 candidate markers were observed, 10 candidate markers for germination rate, five candidate markers for germination ratio (GP), five markers for radicle length (RL), eight markers for coleoptile length (CL), seven markers for plumula length (PL) and eight markers for seed vigor index (SVI). These candidate markers identified in this study for germination and early seedling stage traits could be used in future studies.
The benefits of increased hybrid vigor, which often occur crossing unrelated plants or animals, have been recognized for centuries. In this study, hexaploid oat genotypes E44, K1, and A52 belong to A. sativa and A45 belonging to A. byzantina species were crossed. Heterosis, heterobeltiosis and standard heterosis values were calculated for 11 traits on 12 hybrids belong to K1 x E44 cross (ten hybrids), K1 x A45 cross (one hybrid) and K1 x A52 cross (one hybrid) with the parents. According to the results, parents varied for all traits while hybrids were varied for flag leaf length (FLL), tiller number (TN), 1000-grain weight (1000-GW), grain number per panicle (GNP), grain weight per panicle (GWP), single plant grain yield (SPGY) and biomass (B). K1 x A52 cross had the highest plant height (PH, 201.0 cm), TN (22) and 1000-GW (47.1 g). On the other hand, the highest stem diameter (SD, 9.0 mm), flag leaf width (FLW, 4.0 cm), panicle length (PL, 53.0 cm), GNP(98.0) and GWP (3.2 g) were obtained from K1 x A45 cross. However, K1 x E44 cross had the highest FLL (42.7 cm), SPGY (42.6 g) and B (108.7 g) values. Heterosis values of the oat crosses were significant for all traits except stem diameter, flag leaf length and panicle length, while stem diameter and panicle length for heterobeltiosis and plant height and stem diameter for standard heterosis. Heterosis values were ranked between -26.8 and 282.3% while heterobeltiosis values were between -45.6 and 248.0%, and standard heterosis values were between -2.7 and 419.0%. The highest heterosis and standard heterosis values (282.3 and 419.0%, respectively) were determined for SPGY in K1 x E44 population, while the highest heterobeltiosis value (248.0%) was determined for biomass in K1 x A52 population.
Microsatellite or simple sequence repeat (SSR) markers are important tools for genetic analyses, especially those targeting diversity. The primary objective of this study was to develop robust oat‐based microsatellite markers from newly enriched genomic libraries to expand on a relatively small existing oat SSR toolbox. Microsatellite motifs characterized by (CA/GT), (AAT/TTA), (ATG/TAC) and (CATC/GTAG) repeats were targeted for enrichment. Preliminary screening showed that 90% of clones from the (CA/GT) and 79% of the clones from the (ATG/TAC) libraries contained repeats, while < 11% of the clones from (AAT/TTA) and (CATC/GTAG) libraries contained repeats. Subsequent sequencing of 1536 clones from the (CA/GT) and (ATG/TAC) libraries resulted in 539 and 578 SSRs for which primers were designed, respectively. A total of 246 SSRs were polymorphic across 11 oat lines. One hundred and twenty‐five of the markers produced highly reproducible assays that interrogated 369 alleles at 193 loci. Of these, 79 robust assays interrogated 146 codominant alleles. These markers will be useful for a wide range of genetic analyses in oat including assessment of diversity and marker‐assisted breeding.
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