Bioethanol is a biofuel produced mainly from the fermentation of carbohydrates derived from agricultural feedstocks by the yeast Saccharomyces cerevisiae. One of the most widely adopted strains is PE-2, a heterothallic diploid naturally adapted to the sugar cane fermentation process used in Brazil. Here we report the molecular genetic analysis of a PE-2 derived diploid (JAY270), and the complete genome sequence of a haploid derivative (JAY291). The JAY270 genome is highly heterozygous (;2 SNPs/kb) and has several structural polymorphisms between homologous chromosomes. These chromosomal rearrangements are confined to the peripheral regions of the chromosomes, with breakpoints within repetitive DNA sequences. Despite its complex karyotype, this diploid, when sporulated, had a high frequency of viable spores. Hybrid diploids formed by outcrossing with the laboratory strain S288c also displayed good spore viability. Thus, the rearrangements that exist near the ends of chromosomes do not impair meiosis, as they do not span regions that contain essential genes. This observation is consistent with a model in which the peripheral regions of chromosomes represent plastic domains of the genome that are free to recombine ectopically and experiment with alternative structures. We also explored features of the JAY270 and JAY291 genomes that help explain their high adaptation to industrial environments, exhibiting desirable phenotypes such as high ethanol and cell mass production and high temperature and oxidative stress tolerance. The genomic manipulation of such strains could enable the creation of a new generation of industrial organisms, ideally suited for use as delivery vehicles for future bioenergy technologies.

Brazil is the largest producer of bioethanol, and sugarcane is the main raw material. Bioethanol is produced by both batch and continuous processes, and in some cases, flocculating yeast is used. This article analyzes the Brazilian Ethanol Program. For the 1996-1997 harvest, Brazil produced 14.16 billion L of ethanol and 13.8 million metric t of sugar, from 286 million metric t of sugarcane. These products were produced by 328 industries in activity, with 101 autonomous ethanol plants producing only ethanol, and 227 sugar mills producing sugar and ethanol. The sugar-ethanol market reaches about 7.5 billion US$/yr, accounting for direct and indirect revenues.

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The aim of this work was to implement experimentally a simple glucose-limited feeding strategy for yeast biomass production in a bubble column reactor based on a spreadsheet simulator suitable for industrial application. In biomass production process using Saccharomyces cerevisiae strains, one of the constraints is the strong tendency of these species to metabolize sugars anaerobically due to catabolite repression, leading to low values of biomass yield on substrate. The usual strategy to control this metabolic tendency is the use of a fed-batch process in which where the sugar source is fed incrementally and total sugar concentration in broth is maintained below a determined value. The simulator presented in this work was developed to control molasses feeding on the basis of a simple theoretical model in which has taken into account the nutritional growth needs of yeast cell and two input data: the theoretical specific growth rate and initial cell biomass. In experimental assay, a commercial baker’s yeast strain and molasses as sugar source were used. Experimental results showed an overall biomass yield on substrate of 0.33, a biomass increase of 6.4 fold and a specific growth rate of 0.165 h−1 in contrast to the predicted value of 0.180 h-1 in the second stage simulation.

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Seeking to understand the dynamics of the yeast population in a bioethanol fermentation process that uses cell recycling, the yeast inhabiting the fermentation tanks throughout the production season were monitored. A total of 26 yeasts were isolated from tanks in a Brazilian bioethanol distillery plant during six different periods of the season. These yeasts were evaluated with regard to fermentative capacity and all yeasts were qualified to be used for bioethanol production. Based on the numerical taxonomy, it was possible to say that they were all representative of Saccharomyces sensu stricto. A total of 10 different banding patterns were obtained from the 16 strains isolated. This work has shown that the yeast introduced at the beginning of the season was quickly replaced by one or more native yeast strains. It was also shown that the replacement of these strains is not always harmful to the process and isolating such yeasts found in the fermentation tanks could be an interesting strategy for new strain selection.

-The purpose of this work was to develop a continuous fermentation system operating with a tower reactor using some flocculent yeast strains isolated from an industrial process. The strain was an used in the trial of the proposed system, composed of two serial glass tower reactor. The effects of the following variables were studied on the yield and productivity of the system: total reducing sugar (TRS), concentration in feeding, recycle flow in the second reactor, residence time and diameter/height ratio of the reactors. It was observed that the TRS concentration in feeding and residence time is the variables that interfere most with the productivity of the system. Yield was not affected by any of the variables within the range of values studied. All trials were performed according to a factorial experimental design (making up a total of 19 trials) and the results were evaluated by response surface.

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