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Xylella fastidiosa is a plant pathogenic bacterium that lives inside the host xylem vessels, where it forms biofilm believed to be responsible for disrupting the passage of water and nutrients. Here, Nicotiana tabacum was infected with X. fastidiosa, and the spatial and temporal changes in the whole-leaf ionome (i.e. the mineral and trace element composition) were measured as the host plant transitioned from healthy to diseased physiological status. The elemental composition of leaves was used as an indicator of the physiological changes in the host at a specific time and relative position during plant development. Bacterial infection was found to cause significant increases in concentrations of calcium prior to the appearance of symptoms and decreases in concentrations of phosphorous after symptoms appeared. Field-collected leaves from multiple varieties of grape, blueberry, and pecan plants grown in different locations over a four-year period in the Southeastern US showed the same alterations in Ca and P. This descriptive ionomics approach characterizes the existence of a mineral element-based response to X. fastidiosa using a model system suitable for further manipulation to uncover additional details of the role of mineral elements during plant-pathogen interactions. This is the first report on the dynamics of changes in the ionome of the host plant throughout the process of infection by a pathogen.

Single-spore isolates of Monilinia fructicola were collected from commercial orchards in South Carolina and Georgia with prolonged past exposure to demethylation inhibitor (DMI) fungicides and from an orchard with no DMI history (baseline population). Sensitivity to propiconazole was determined using the concentration in agar media required to suppress radial growth of mycelium by 50% (EC50. Mean EC50 values from six South Carolina populations were not different from the baseline population (P < 0.05). Two of five populations from Georgia revealed (significantly higher mean EC50 values compared with the baseline population (P < 0.05). Isolates with high (AP5 and AP6) and low (DL71 and DL72) EC50 values were selected to determine disease incidence on peach fruit after protective or curative applications of propiconazole at 0.15 or 0.3 liter/ha (half and full label rate, respectively). Disease incidence was significantly greater on peaches inoculated with AP5 and AP6 after curative treatment with propiconazole at 0.15 liter/ha (P < 0.05). Following protective or curative treatments at 0.3 liter/ha, disease incidence was significantly greater for AP6 but not for AP5. These results suggest that a shift toward reduced sensitivity has developed in some M. fructicola populations from Georgia, and that isolates with reduced sensitivity to propiconazole are more difficult to control in the field. Field testing of DMI fungicides, captan, QoI fungicides, and fenhexamid in experimental orchards) indicated that the DMI fungicides are still among the most efficacious products for brown rot (control, and that new products containing QoI fungicides may be viable disease control alternatives or rotation partners.

Since 2004, growers and scientists have observed a disorder described as “yellow twig” or “yellow stem” affecting a major selection of southern highbush blueberry, FL 86-19, in the south Georgia blueberry production region. The initial symptom observed was leaf marginal chlorosis and subsequent necrosis, which eventually progressed throughout the whole leaf resulting in early leaf fall. Thin, yellow twigs or yellow stems became evident on some cultivars. The described symptoms on blueberry were similar to those exhibited on grapes with Pierce's disease and on plum with leaf scald disease. This prompted the enzyme-linked immunosorbent assay (ELISA) tests and isolations of Xylella fastidiosa, which is the causal agent of the previously mentioned grape and plum diseases. Two leaf and two root tissue samples were collected from a diseased FL 86-19 plant for isolation and ELISA testing on 2 Mar. 2006. ELISA results indicated all four tissues tested positive for the bacterial pathogen, X. fastidiosa, whereas only the two root tissues provided positive isolations. One leaf and one root tissue sample were later collected from each of five additional diseased plants for isolation and ELISA testing. Both isolation and ELISA testing methods obtained positive results. Cultures were multiplied to inoculate seedlings of three cultivars: ‘Southern Belle’ (eight plants), ‘Premier’ (six), and ‘Powderblue’ (six) on 23 May 2006 and one selection, FL 86-19 (eight), on 31 May 2006. Two FL 86-19 plants started to show symptoms of marginal necrosis 54 days postinoculation, whereas one plant each of ‘Southern Belle’ and ‘Powderblue’ started to show symptoms of marginal necrosis 63 days postinoculation and ‘Premier’ stayed symptomless. All eight culture-inoculated FL 86-19 plants (100%) showed symptoms 72 days postinoculation, but no symptoms were observed on the control plants. One hundred twenty-six days postinoculation, two ‘Powderblue’ and four ‘Southern Belle’ plants showed mild symptoms, whereas all ‘Premier’ plants were asymptomatic. Positive reisolations of the bacteria from the inoculated symptomatic plants, not from asymptomatic plants, fulfilled Koch's postulates, which confirmed X. fastidiosa was the causal bacterium of the new blueberry disorder, the bacterial leaf scorch of blueberry.

Quinone outside inhibitor (QoI) and succinate dehydrogenase inhibitor (SdhI) fungicides are respiration inhibitors (RIs) used for preharvest control of brown rot of stone fruit. Both chemical classes are site-specific and, thus, prone to resistance development. Between 2006 and 2008, 157 isolates of Monilinia fructicola collected from multiple peach and nectarine orchards with or without RI spray history in South Carolina and Georgia were characterized based upon conidial germination and mycelial growth inhibition for their sensitivity to QoI fungicides azoxystrobin and pyraclostrobin, SdhI fungicide boscalid, and a mixture of pyraclostrobin + boscalid. There was no significant difference (P = 0.05) between EC50 values for inhibition of conidial germination versus mycelial growth. The mean EC50 values based upon mycelial growth tests for 25 isolates from an orchard without RI-spray history were 0.15, 0.06, 2.23, and 0.09 μg/ml for azoxystrobin, pyraclostrobin, boscalid, and pyraclostrobin + boscalid, respectively. The respective mean EC50 values for 76 isolates from RI-sprayed orchards in South Carolina were 0.9, 0.1, 10.7, and 0.13 μg/ml and for 56 isolates from RI-sprayed orchards in Georgia were 1.2, 0.1, 8.91, and 0.17 μg/ml. Overall, mean EC50 values of populations from RI-sprayed orchards increased three-, two-, five-, and twofold between 2006 and 2008 for azoxystrobin, pyraclostrobin, boscalid, and pyraclostrobin + boscalid, respectively. A subset of 10 M. fructicola isolates representing low and high EC50 values for azoxystrobin, boscalid, and boscalid + pyraclostrobin was selected for a detached fruit assay to determine disease incidence and severity following protective treatments of formulated RI fungicides at label rates. Brown rot incidence was greater than 50% when fruit were inoculated with isolates having EC50 values of 2, 4, and 0.6 μg/ml for azoxystrobin, boscalid, and pyraclostrobin + boscalid, respectively. Pyraclostrobin failed to control any of the isolates tested in detached fruit assays. Based on minimum inhibitory concentration and brown rot incidence data, we recommend using 3 and 0.75 μg/ml as discriminatory doses to distinguish between sensitive isolates and those with reduced sensitivity to azoxystrobin and pyraclostrobin + boscalid, respectively. Results from our in vitro and in vivo assays indicate a shift toward reduced sensitivity in M. fructicola from the southeastern United States. No cross-resistance was observed between the QoI and the SdhI fungicides, which implies that rotation or tank mixtures of these two chemical classes can be used as a resistance management strategy.

Pierce's disease (PD) caused by Xylella fastidiosa (Xf) is a major threat to the rapidly growing Vitis vinifera/French-American hybrid winegrape industry in the southeastern United States. The bacterium, which is transmitted by xylemfeeding insects, is unable to survive low winter temperatures, and infected vines often recover the next year. Maps available from the 1970s indicate that PD is not a serious threat in the southeastern US, where the average minimum January temperature is ≤ 1.7°C. However PD symptoms developed in many vineyards planted in the late 1990s in areas identified as low risk. Surveys conducted in North Carolina and Georgia confirmed the presence of Xf in symptomatic vines using ELISA kits. Weather data for November to March from 84 weather stations from 1972-2005 for Alabama, Georgia, North Carolina, South Carolina, Tennessee, and Virginia were used to construct new maps using ArcGIS 9.1, and PD survey data from vineyards were superimposed on the maps. Areas for low risk for PD corresponded most closely with a minimum winter temperature of ≤ -12.2°C for 2 to 3 days or ≤ -9.4°C for 4 to 5 days. Warm winter temperatures during the last 8 years have resulted in a significant shift in the isotherms towards the north and west, increasing the risk of PD in the Piedmont region of the Southeast, and have extended the threat into Virginia and Tennessee. Accepted for publication 11 March 2008. Published 18 July 2008.

Bacterial leaf scorch, caused by Xylella fastidiosa , is a major threat to blueberry production in the southeastern United States. Management of this devastating disease is challenging and often requires early detection of the pathogen to reduce major loss. There are several different molecular and serological detection methods available to identify the pathogen. Knowing the efficiency and suitability of these detection techniques for application in both field and laboratory conditions is important when selecting the appropriate detection tool. Here, we compared the efficiency and the functionality of four different molecular detection techniques (PCR, real-time PCR, LAMP and AmplifyRP® Acceler8™) and one serological detection technique (DAS-ELISA). The most sensitive method was found to be real-time PCR with the detection limit of 25 fg of DNA molecules per reaction (≈9 genome copies), followed by LAMP at 250 fg per reaction (≈90 copies), AmplifyRP® Acceler8™ at 1 pg per reaction (≈350 copies), conventional PCR with nearly 1.25 pg per reaction (≈ 440 copies) and DAS-ELISA with 1x10 5 cfu/mL of Xylella fastidiosa . Validation between assays with 10 experimental samples gave consistent results beyond the variation of the detection limit. Considering robustness, portability, and cost, LAMP and AmplifyRP® Acceler8™ were not only the fastest methods but also portable to the field and didn’t require any skilled labor to carry out. Among those two, AmplifyRP® Acceler8™ was faster but more expensive and less sensitive than LAMP. On the other hand, real-time PCR was the most sensitive assay and required comparatively lesser time than C-PCR and DAS-ELISA, which were the least sensitive assays in this study, but all three assays are not portable and needed skilled labor to proceed. These findings should enable growers, agents, and diagnosticians to make informed decisions regarding the selection of an appropriate diagnostic tool for X . fastidiosa on blueberry.

Mycotoxins pose a challenge to a safe food supply worldwide, and their threat is expected to worsen with our changing climate. The need for diligence is exemplified by the discovery of fumonisin B2 in wine, which joins ochratoxin A as a mycotoxin of concern in the grape-wine chain. To elucidate the mycotoxin risk in southeastern American wine, grape samples were collected from vineyards during harvest in 2013 and potentially mycotoxigenic fungi (Fusarium and Aspergillus) were isolated from the samples. Numerous Fusarium isolates were recovered and identified to the species level by comparison of translation elongation factor 1-α gene sequences to verified strains. Fusarium fujikuroi was the most abundant species recovered (239 isolates), followed by F. proliferatum (52), F. incarnatum-equiseti (14), F. oxysporum (7), F. concentricum (1), and F. solani (1). In vitro assays quantified fumonisin production for representative isolates via liquid chromatography-tandem mass spectrometry. Surprisingly, nearly all F. fujikuroi isolates produced fumonisins B1, B2, and B3 at levels comparable to both the F. proliferatum isolates and the positive control, Fusarium verticillioides. Such capacity for fumonisin production refutes the generally accepted notion that F. fujikuroi produces undetectable or low levels of fumonisins and provides evidence to reconsider this species as a mycotoxigenic threat to economically significant crops.