Doubled haploid (DH) technology has changed the maize-breeding landscape in recent years. Traditionally, DH production requires the use of chemical doubling agents to induce haploid genome doubling and, subsequently, male fertility. These chemicals can be harmful to humans and the plants themselves, and typically result in a doubling rate of 10%-30%. Spontaneous genome doubling and male fertility of maize haploids, without using chemical doubling agents, have been observed to a limited extent, for nearly 70 years. Rates of spontaneous haploid genome doubling (SHGD) have ranged from less than 5% to greater than 50%. Recently, there has been increased interest to forgo chemical treatment and instead utilize this natural method of doubling. Genetic-mapping studies comprising worldwide germplasm have been conducted. Of particular interest has been the detection of large-effect quantitative trait loci (QTL) affecting SHGD. Having a single large-effect QTL with an additive nature provides flexibility for the method of introgression, such as marker-assisted backcrossing, marker-assisted gene pyramiding, and systematic design. Moreover, it allows implementation of new methodologies, such as haploid-inducer mediated genome editing (HI-edit) and promotion of alleles by genome editing. We believe the use of SHGD can further enhance the impact of DH technology in maize.
Major locus for spontaneous haploid genome doubling detected by a case-control GWAS in exotic maize germplasm
Key messageA major locus for spontaneous haploid genome doubling was detected by a case-control GWAS in an exotic maize germplasm. The combination of double haploid breeding method with this locus leads to segregation distortion on genomic regions of chromosome five.
Fertilization and kernel development are crucial for breeding and agronomic production of maize (Zea mays L.), which is prone to outcrossing. Because of this tendency, a major issue for organic corn farmers is to maintain genetic purity of their crop. One way to maintain this purity is to use a unilateral cross incompatibility system such as Ga1-s. However, lack of complete pollen exclusion has been reported in Ga1-s heterozygotes, complicating introgression of this trait into breeding germplasm. A systematic, quantitative evaluation of pollen exclusion rates in breeding lines would greatly facilitate use of this system. The purpose of this study is to quantitatively evaluate exogenous ga1 pollen exclusion of a diverse set of Ga1-s/ga1 F 1 hybrids representing the stiff stalk and nonstiff stalk heterotic groups, and the Iowa Synthetic Corn Borer population. Differences between genotypes but not heterotic groups were observed when applying exogenous ga1 pollen onto heterozygotes possessing the same Ga1-s allele, indicating there are epistatic interactions between Ga1-s and modifier loci in the ga1 parents tested.
Sorghum [Sorghum bicolor (L.) Moench] germplasm lines Tx3489 (Reg. no. GP-943, PI 698649) and Tx3490 (Reg. no GP-944, PI 698650) with yellow seed, favorable agronomics, and popping attributes in hybrid combinations were developed by the Texas A&M AgriLife Research sorghum breeding and genetics program in 2020. Compared with a grain sorghum hybrid check, these lines produced hybrids with similar agronomic performance and superior popping performance. In hybrid combinations, the two lines produced hybrids comparable to the agronomic productivity of standard grain sorghum hybrids. Additionally, these two lines produced hybrids with 84 and 78% popping efficiency, 9:1 and 7.4:1 expansion ratios and 0.35-and 0.34-cm 3 flake sizes. In contrast, the check hybrid produced grain with 74% popping efficiency, 6.3:1 expansion ratio and a 0.25-cm 3 flake. Ultimately these two lines produce grain sorghum hybrids with comparable agronomic productivity and superior popping performance. While these lines can be used as pollinator parents to produce grain sorghum hybrids for popping, they may also be a parent for the development of new pop sorghum parental lines.
Adapted exotic maize (Zea mays L.) germplasm, such as BS39, provides a unique opportunity for broadening the genetic base of U.S. Corn Belt germplasm. In vivo doubled haploid (DH) technology has been used to efficiently exploit exotic germplasm. It can help to purge deleterious recessive alleles. The objectives of this study were to determine the usefulness of BS39-derived inbred lines using both SSD and DH methods, to determine the impact of spontaneous as compared to artificial haploid genome doubling on genetic variance among BS39-derived DH lines, and to identify SNP markers associated with agronomic traits among BS39 inbreds monitored at testcross level. We developed two sets of inbred lines directly from BS39 by DH and SSD methods, named BS39_DH and BS39_SSD. Additionally, two sets were derived from a cross between BS39 and A427 (SHGD donor) by DH and SSD methods, named BS39×A427_DH and BS39×A427_SSD, respectively. Grain yield, moisture, plant height, ear height, stalk lodging, and root lodging were measured to estimate genetic parameters. For genome-wide association (GWAS) analysis, inbred lines were genotyped using Genotype-by-Sequencing (GBS) and Diversity Array Technology Sequencing (DArTSeq). Some BS39-derived inbred lines performed better than elite germplasm inbreds and all sets showed significant genetic variance. The presence of spontaneous haploid genome doubling genes did not affect performance of inbred lines. Five SNPs were significant and three of them located within genes related to plant development or abiotic stresses. These results demonstrate the potential of BS39 to add novel alleles to temperate elite germplasm.
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