Over the past century, the Brazilian Atlantic forest has been reduced to small, isolated fragments of forest. Reproductive isolation theories predict a loss of genetic diversity and increases in inbreeding and spatial genetic structure (SGS) in such populations. We analysed eight microsatellite loci to investigate the pollen and seed dispersal patterns, genetic diversity, inbreeding and SGS of the tropical tree Copaifera langsdorffii in a small (4.8 ha), isolated population. All 112 adult trees and 128 seedlings found in the stand were sampled, mapped and genotyped. Seedlings had significantly lower levels of genetic diversity (A ¼ 16.5 ± 0.45, mean±95% s.e.; H e ¼ 0.838±0.006) than did adult trees (A ¼ 23.2±0.81; H e ¼ 0.893±0.030). Parentage analysis did not indicate any seed immigration (m seeds ¼ 0) and the pollen immigration rate was very low (m pollen ¼ 0.047). The average distance of realized pollen dispersal within the stand was 94 m, with 81% of the pollen travelling o150 m. A significant negative correlation was found between the frequency and distance of pollen dispersal (r ¼ À0.79, Po0.01), indicating that short-distance pollinations were more frequent. A significant SGS for both adults (B50 m) and seedlings (B20 m) was also found, indicating that most of the seeds were dispersed over short distances. The results suggested that the spatial isolation of populations by habitat fragmentation can restrict seed and pollen gene flow, increase SGS and affect the genetic diversity of future generations.

O presente trabalho objetivou analisar as alterações das propriedades físicas de um Latossolo Vermelho-Escuro, sob diferentes culturas e sua capacidade de recuperação. No ano de 1996, foram coletadas amostras de solos sob vegetação de milho, pinus, eucalipto, pastagem e mata ciliar, após 10 anos de cultivo, e cerrado (condição natural), em três profundidades (0,00-0,10; 0,10-0,20 e 0,20-0,40 m), em áreas pertencentes à Fazenda de Ensino e Pesquisa da Faculdade de Engenharia de Ilha Solteira - UNESP, localizada no município de Selvíria, MS. O delineamento experimental utilizado foi o inteiramente casualizado, com 18 tratamentos e 10 repetições. Nos diferentes tratamentos, determinaram-se macroporosidade, microporosidade, porosidade total, densidade do solo, análise granulométrica e resistência à penetração. Com base nos resultados, concluiu-se que ocorreram alterações nas propriedades físicas do solo, quando se compararam os diferentes usos com a condição natural; as áreas com mata ciliar e pinus foram as que mais se aproximaram das condições naturais, apresentando, porém, compactação na camada superficial; as áreas apresentaram maior alteração na profundidade de 0,00-0,10 m, com exceção da área com culturas anuais.

Throughout the world, large trees are increasingly rare. Cariniana legalis is the tallest tree species of the Brazilian Atlantic Forest, reaching up to 60 m in height. Due to extensive deforestation of the Atlantic Forest, remnant C. legalis populations are small and spatially isolated, requiring the development of strategies for their conservation. For in situ and ex situ genetic conservation to be effective, it is important to understand the levels and patterns of spatial genetic structure (SGS), and gene flow. We investigated SGS and pollen flow in three small, physically isolated C. legalis stands using microsatellite loci. We measured, mapped, and sampled all C. legalis trees in the three stands: 65 trees from Ibicatu population, 22 trees from MGI, and 4 trees from MGII. We also collected and genotyped 600 seeds from Ibicatu, 250 seeds from MGI, and 200 seeds from MGII. Significant SGS was detected in Ibicatu up to 150 m, but substantial levels of external pollen flow were also detected in Ibicatu (8%), although not in MGI (0.4%) or MGII (0%). Selfing was highest in MGII (18%), the smallest group of trees, compared to MGI (6.4%) and Ibicatu (6%). In MGI and MGII, there was a strong pattern of mating among near‐neighbors. Seed collection strategies for breeding, in situ and ex situ conservation and ecological restoration, must ensure collection from seed trees located at distances greater than 350 m and from several forest fragments.

This study examines the levels of gene flow, the distance and the patterns of pollen and seed dispersal, the intra-population spatial genetic structure (SGS) and the effective population size of a spatially isolated Myracrodruon urundeuva population using five microsatellite loci. The study was carried out in the Paulo de Faria Ecological Station, São Paulo State, Brazil and included the sampling and mapping of 467 adult-trees and 149 juveniles. Open-pollinated seeds (514) from 29 seed-trees were also sampled and genotyped. Significant SGS was detected in both adult (S p = 0.0269) and juveniles trees (S p = 0.0246), indicating short-distance seed dispersal. Using maternity analysis, all juveniles had the mother-tree assigned within the stand. A father-tree within the stand was also assigned for 97.3% of the juveniles and 98.4% of offspring. The average pollen dispersal distance measured in juvenilesd ¼ 138 AE 169 m; mean AE SD and offspringd ¼ 252 AE 204 m were higher than the average seed dispersal distance measured in juvenileŝ d ¼ 124 AE 150 m . About 70% of the pollen from juveniles and 51% from offspring traveled less than 200 m and, 72% of the seeds traveled less than 50 m. The effective population size of the studied sample indicates that the 467 adult-trees and 145 juveniles correspond respectively to 335 and 63 individuals that are neither inbred nor relatives.The results are discussed in relation to their impact on seed collection practices and genetic conservation.

Selfing or mating between related individuals in self-compatible hermaphroditic tree species may lead to inbreeding depression (ID) due to homozygosis in recessive, identical by descent alleles. In general, studies of ID in tree species have been based on comparisons of selfed individuals (produced by controlled pollination) with outcrossed individuals for quantitative traits in progeny tests. However, this approach requires a long time to quantify the extent of ID. Thus, we used an approach based on genetic markers to estimate coancestry coefficients between assigned parents from paternity analysis in two populations of the Neotropical tree Cariniana legalis. Using this method, we were able to determine which seedlings in a nursery trial originated from; i) outcrossing between un-related trees, ii) mating between related trees and iii) selfing. We detected a low selfing rate (< 10%), but a substantial quantity of seedlings from mating between related parents (minimum of 35.7%). In general, the outcrossed seedlings from unrelated parents exhibited significantly greater genetic diversity than those resulting from selfing and mating among relatives. The extent of ID varied among traits and populations. Outcrossed seedlings originating from unrelated trees generally showed greater survival than seedlings originating from selfing and related parents. Inbreeding depression was greater in the selfed seedlings than in those from mating among related parents. The results are discussed in terms of implications for genetic conservation, breeding and environmental restoration using the species.In the present study, we used a different approach to estimate ID in a large tree of the Atlantic rain forest, i.e., Cariniana legalis L (Lecythidaceae), using seven codominant nuclear microsatellite loci, paternity analysis and estimates of pairwise coancestry between seed trees and pollen donors assigned by paternity analysis. Paternity analysis permits the detection of selfed seeds and the father of outcrossed seeds where the seed tree is known. Outcrossed seeds are not inbred if they result from mating between unrelated parents and inbred if from related parents. The degree of relatedness among seed trees and assigned pollen donors (seed parents) of sampled seeds can be inferred from pairwise coancestry coefficient estimates (θ ). Seed parents can be non-relatives (θ ≤ 0) or relatives (θ > 0). Thus, the combination of paternity analysis and estimates of the pairwise coancestry coefficient between seed parents permits estimation of the rate of mating among relatives. If genotyped open-pollinated seeds used in the paternity analysis are established in a progeny test, quantitative and qualitative traits can be measured. Thus, each plant can be grouped as originating from selfing, mating among related individuals or outcrossing among non-relatives, and the means of traits can be estimated for each of these three groups. Consequently, ID from selfing and mating among relatives can be estimated for a phenotypic trait, as the relative pe...

Pollen flow and dispersal patterns were investigated in a small, isolated forest fragment of the Neotropical insect pollinated tree Copaifera langsdorffii, using paternity analysis and eight microsatellite loci. We also investigated the coancestry and effective population size of progeny arrays for conservation and environmental restoration purposes. Open-pollinated seeds were collected from 15 seed trees within the forest fragment, in which all adult trees were mapped, measured and genotyped. Twenty seeds were also collected from the nearest neighbor tree located 1.2 km from the forest fragment. Our results show that levels of genetic diversity were significantly higher in adults than offspring and significant levels of inbreeding were detected in offspring (F = 0.226). From paternity analysis, we observed low levels of selfing (s = 8%) and pollen immigration (m = 8%) in the fragment, but very high levels were detected for the isolated tree (s = 20%; m = 75%), indicating that the population and the tree are not reproductively isolated and are connected by patterns of long distance pollen dispersal (maximum detected 1,420 m). Within the forest fragment, the pattern of pollen dispersal was a near neighbor pattern with 49% of the pollen being dispersed within 50 m. The effective population size of the progeny array was low, indicating the need to collect seeds from a large number of seed trees (at least 76) for conservation purposes. The results show that the spatial isolation of the population and isolated tree due to forest fragmentation has not disrupted genetic connectivity; however, spatial isolation does seem to increase selfing and correlated mating.

Hymenaea stigonocarpa is a neotropical tree that is economically important due to its high‐quality wood; however, because it has been exploited extensively, it is currently considered threatened. Microsatellite loci were used to investigate the pollen and seed dispersal, mating patterns, spatial genetic structure (SGS), genetic diversity, and inbreeding depression in H. stigonocarpa adults, juveniles, and open‐pollinated seeds, which were sampled from isolated trees in a pasture and trees within a forest fragment in the Brazilian savannah. We found that the species presented a mixed mating system, with population and individual variations in the outcrossing rate (0.53–1.0). The studied populations were not genetically isolated due to pollen and seed flow between the studied populations and between the populations and individuals located outside of the study area. Pollen and seed dispersal occurred over long distances (>8 km); however, the dispersal patterns were isolated by distance, with a high frequency of mating occurring between near‐neighbor trees and seeds dispersed near the parent trees. The correlated mating for individual seed trees was higher within than among fruits, indicating that fruits present a high proportion of full‐sibs. Genetic diversity and SGS were similar among the populations, but offspring showed evidence of inbreeding, mainly originating from mating among related trees, which suggests inbreeding depression between the seed and adult stages. Selfing resulted in a higher inbreeding depression than mating among relatives, as assessed through survival and height. As the populations are not genetically isolated, both are important targets for in situ conservation to maintain their genetic diversity; for ex situ conservation, seeds can be collected from at least 78 trees in both populations separated by at least 250 m.

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