Here we show how agricultural practices by indigenous peoples as well as forest recovery relate to the structure and composition of Amazon soil bacterial communities. Soil samples were collected in different land use systems and bacterial community composition and diversity were explored by T-RFLP, cloning and sequencing, and data were analyzed with multivariate techniques. The main differences in bacterial community structure were related to changes in the soil attributes that, in turn, were correlated to land use. Community structure changed significantly along gradients of base saturation, [Al 3 þ ] and pH. The relationship with soil attributes accounted for about 31% of the variation of the studied communities. Clear differences were observed in community composition as shown by the differential distribution of Proteobacteria, Bacteroidetes, Firmicutes, Acidobacteria and Actinobacteria. Similarity between primary and secondary forest communities indicates the recovery of bacterial community structure during succession. Pasture and crop soil communities were among the most diverse, showing that these land use types did not deplete bacterial diversity under the conditions found in our sites.
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A biomassa e a atividade microbiana têm sido apontadas como indicadores adequados de alterações provocadas por diferentes sistemas de uso e manejo do solo. O objetivo deste trabalho foi avaliar as alterações na biomassa e na atividade microbiana de um Latossolo Vermelho-Amarelo ácrico típico, sob Cerrado nativo e diferentes sistemas de manejo, na região fisiográfica Campos das Vertentes, Minas Gerais. Os sistemas avaliados foram: cultivo convencional com batata (CCB); cultivo com batata, sucedido por aveia e rotação com milho (CBAM); cultivo convencional com milho (CCM); plantio direto com milho (PDM); cultivo convencional com eucalipto (CCE); e o Cerrado nativo (CN) como referência. Foram coletadas amostras de solo nas profundidades de 0-10, 10-20 e 20-30 cm, analisados o C microbiano (Cmic) e a respiração basal e calculados o quociente metabólico (qCO 2 ) e a relação Cmic/C orgânico. A biomassa e a atividade microbiana foram influenciadas pelos diferentes sistemas de manejo do solo, e as condições mais satisfatórias para a microbiota do solo ocorreram no Cerrado nativo. O manejo mais intensivo do solo e o uso frequente de agrotóxicos, característicos dos sistemas CCB e CBAM, determinaram redução nos teores de Cmic, menores valores da relação Cmic/C orgânico e maiores valores de qCO 2 , indicando uma provável condição de estresse para a biomassa microbiana. Termos de indexação: carbono microbiano, qualidade do solo, matéria orgânica.(1) Parte da Dissertação de Mestrado do primeiro autor apresentada ao Curso de Pós-Graduação em Ciência do Solo da Univer-
Anthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we evaluated bacterial community composition and diversity across a gradient of land use intensity in the eastern Amazon from undisturbed primary forest, through primary forests varyingly disturbed by fire, regenerating secondary forest, pasture, and mechanized agriculture. Soil bacteria were assessed by paired-end Illumina sequencing of 16S rRNA gene fragments (V4 region). The resulting sequences were clustered into operational taxonomic units (OTU) at a 97% similarity threshold. Land use intensification increased the observed bacterial diversity (both OTU richness and community heterogeneity across space) and this effect was strongly associated with changes in soil pH. Moreover, land use intensification and subsequent changes in soil fertility, especially pH, altered the bacterial community composition, with pastures and areas of mechanized agriculture displaying the most contrasting communities in relation to undisturbed primary forest. Together, these results indicate that tropical forest conversion impacts soil bacteria not through loss of diversity, as previously thought, but mainly by imposing marked shifts on bacterial community composition, with unknown yet potentially important implications for ecological functions and services performed by these communities.
SUMMARYThis paper reports the nodulation status of 172 legume species from different ecosystems within the Amazon region of Brazil. The nodulation ability of 98 species and eight genera was observed for the first time. Occurrence of nodulation is discussed in the context of the taxonomy of the family and the different ecosystems. The frequency of nodulation among tribes and genera was found to be higher in flooded {varzea and igapo) than in non-flooded sites {terra firme); moreover, more plants had nodulated in nursery beds consisting of soil from flooded areas. The symbiosis may therefore be favoured in flooded areas.
Understanding native communities is a crucial step for the management of biological nitrogen fixation, since they may be either a source of efficient strains or a limiting factor when efficient strains need to be introduced. This work aimed to evaluate the density, diversity and efficiency of Leguminosae nodulating bacterial (LNB) communities and their component strains in soils under various land use systems (LUSs): pristine forest, agriculture, pasture, agroforestry, young secondary forest, and old secondary forest,. The LNB communities were trapped from these soils by using the promiscuous host siratro under controlled conditions. We also studied their relationships with physical and chemical attributes of the soil. Agroforestry and agriculture soil samples induced the highest number of nodules in siratro, while forest soil samples induced the lowest number of nodules. No relationship was found between LNB and Leguminosae species diversity in the LUSs. The soil chemical variables that were most related to differences in nodule number and shoot dry matter weight of plants inoculated with soil suspensions of the LUSs were, respectively: Ca 2+ , Mg 2+ , base saturation, exchangeable bases and Cu 2+ ; and pH, cation exchange capacity, B, Cu 2+ and clay. Although, LNB communities from all LUSs were efficient under controlled and similar conditions, they were found to be composed of strains with variable efficiency: inefficient, efficient, highly efficient and superior efficiency. Efficient strains occurred at the highest frequency in all LUSs. The isolated strains presented similar and new sequences that were phylogenetically related to well known LNB genera in α-and β-Proteobacteria. Unusual genera in these branches, as well as in other branches, which are probably endophytic bacteria, were also isolated from nodules. These data support siratro as a useful trap species to study the LNB biodiversity of diverse ecosystems in tropical soils. The fact that the highest diversity and nodulation were seen in managed systems such as agriculture and agroforestry suggests a high resilience of LNB communities to changes in land use after deforestation in a region where large forest areas are still preserved and can be a source of propagules.
Determination of soil properties helps in the correct management of soil fertility. The portable X-ray fluorescence spectrometer (pXRF) has been recently adopted to determine total chemical element contents in soils, allowing soil property inferences. However, these studies are still scarce in Brazil and other countries. The objectives of this work were to predict soil properties using pXRF data, comparing stepwise multiple linear regression (SMLR) and random forest (RF) methods, as well as mapping and validating soil properties. 120 soil samples were collected at three depths and submitted to laboratory analyses. pXRF was used in the samples and total element contents were determined. From pXRF data, SMLR and RF were used to predict soil laboratory results, reflecting soil properties, and the models were validated. The best method was used to spatialize soil properties. Using SMLR, models had high values of R² (≥0.8), however the highest accuracy was obtained in RF modeling. Exchangeable Ca, Al, Mg, potential and effective cation exchange capacity, soil organic matter, pH, and base saturation had adequate adjustment and accurate predictions with RF. Eight out of the 10 soil properties predicted by RF using pXRF data had CaO as the most important variable helping predictions, followed by P 2 O 5 , Zn and Cr. Maps generated using RF from pXRF data had high accuracy for six soil properties, reaching R 2 up to 0.83. pXRF in association with RF can be used to predict soil properties with high accuracy at low cost and time, besides providing variables aiding digital soil mapping.Index terms: Soil analyses; spatial prediction; proximal sensor. RESUMOA determinação de atributos do solo auxilia no correto manejo da sua fertilidade. O equipamento portátil de fluorescência de raios-X (pXRF) foi recentemente adotado para determinar o teor total de elementos químicos em solos, permitindo inferências sobre atributos do solo. No entanto, esses estudos ainda são escassos no Brasil e em outros países. Os objetivos deste trabalho foram prever atributos do solo a partir de dados do pXRF, comparando-se os métodos de regressão linear múltipla stepwise (SMLR) e de random forest (RF), além de mapear e validar atributos do solo. 120 amostras de solo foram coletadas em três profundidades e submetidas a análises laboratoriais. Utilizou-se o pXRF para leitura das amostras e determinou-se o teor total de elementos. A partir dos dados do pXRF, foram utilizadas SMLR e RF para predizer resultados laboratoriais, que refletem atributos do solo, e os modelos foram validados. O melhor método foi utilizado para espacializar os atributos do solo. Utilizando SMLR, os modelos apresentaram valores elevados de R² (≥0,8), porém maior acurácia foi obtida na modelagem com RF. A capacidade de troca de cátions potencial e efetiva, matéria orgânica do solo, pH, saturação por bases e teores trocáveis de Ca, Al e Mg apresentaram ajustes adequados e predições acuradas com RF. Dos dez atributos do solo preditos por RF a partir de dados do pXRF, sete apr...
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