Abstract. Fendiyanto MH, Satrio RD, Darmadi D. 2020. Metabolic profiling and pathway analysis in red arillus of Salacca sumatrana demonstrate significant pyruvate, sulfur, and fatty acid metabolisms. Biodiversitas 21: 4361-4368. Salak or snake fruit (Salacca Reinw.; Arecaceae) is a tropical fruit that has high biodiversity in a tropical country such as Indonesia. Several types of salak can be found in Indonesia, one of which is Salacca sumatrana (Becc.) Mogea. Research on profiling metabolites in S. sumatrana has not been conducted. Therefore, the aim of this study was to determine the metabolite profile and pathway analysis in S. sumatrana, especially in red arillus tissue. This research was conducted by the method of gas chromatography-mass spectrometry (GC-MS) and the study of bioinformatics through metabolomics approaches. The results showed that red arillus had metabolites consisting of groups of fatty acids, esters, alcohols, xylene, phenols, etc.. Significant metabolites found were isobutyl acetate, palmitic acid, formic acid, 2-pentanoic acid, ethylic acid, n-hexadecoic acid, hydroxypentanoic acid, etc. There was a tendency that metabolite ethylic acid, identified as C00033 accession, was a key metabolite in either the pyruvate metabolism pathway or sulfur metabolisms with relatively high impact values. Pathway analysis using bioinformatics studies using MetaboAnalyst shows that four of ten pathways detected had a high log-ratio (p)/pathway impact, i.e., pyruvate metabolism, sulfur metabolism, fatty acid biosynthesis, and biosynthesis of unsaturated fatty acids. Thus, pyruvate, sulfur, and fatty acid metabolisms are important pathways in the red arillus of S. sumatrana. This study can be used as a reference in early metabolomic studies on S. sumatrana using GC-MS and the metabolites identified as metabolite markers can be used for plant breeding and biologists to understand the metabolic mechanism of the red arillus tissues from S. sumatrana.
<abstract> <p>The use of varieties that are able to adapt well to extreme environments is one strategy to overcome the challenges of decreasing production in sub-optimal land. Indonesian tropical rice varieties (Jatiluhur, IPB 9G, IPB 3S, Hipa 19, Mentik Wangi, Ciherang, Inpari 17, and Mekongga) have been tested and established as water-used-efficient varieties in an optimal environment. However, to date, these varieties have not been examined in the suboptimal area, in particular, drought stress conditions. Therefore, this study aimed to evaluate the adaptation response of production, morphological, and physiological character of several water-efficient rice varieties under drought stress in the field. The study was designed in a split-plot with two factors and 4 replications, where the first factor (main plot) was drought stress stages i.e. vegetative (Dv), reproductive (Dr), generative (Dg), and control (Dc). The second factor was rice varieties, consisting of eight varieties, i.e., Jatiluhur, IPB 3S, IPB 9G, Hipa 19, Mentik Wangi, Ciherang, Inpari 17, and Mekongga. The experiment was conducted from May to December 2018 in Muneng Kidul Village, Probolinggo Regency, East Java Province. The experimental variables were morphology, production, leaf scrolling score during drought stress, drought sensitivity index, water use efficiency, physiology and root anatomy. The result showed that upland rice varieties were more tolerant to drought stress and had a higher water use efficiency than lowland rice varieties. This shows that Jatiluhur and IPB 9G which are indicated to be adaptive to drought stress, and have the ability to regulate water use more efficiently when drought stress occurs. Therefore, water use efficiency could be used as selection characters under drought conditions in rice particularly tropical upland rice. Moreover, morphological characters, i.e., grain yiled per plot, weight of pithy grain, weight of shoot biomass and weight of roots could be the selection characters to predict drought tolerant tropical rice. According to physiological characters, photosynthesis rate, transpiration rate, proline content, malondialdehyde content, leaf water potential and leaf greenness could be used as a selection tool to predict water use efficient genotypes in rice. However, further studies are needed to understand the complex mechanisms of water use efficiency by combining various approaches.</p> </abstract>
Abstract. Fendiyanto MH, Satrio RD, Widana IDKK, Pratami MP, Nikmah IA, Darmadi D. 2021. Differential hierarchical metabolites expression of red/white Salacca sumatrana Arillus and its molecular docking studies. Biodiversitas 22: 1014-1024. Salak Sidempuan (Salacca sumatrana) is one of the medicinal plants originating from tropical countries. However, there is very little research on the study of finding bioactive compounds in S. sumatrana using the metabolomic approach. Here, we use two population types of S. sumatrana, e.g., fruit with red and white arillus. We extracted the compounds from the two tissues using the GC-MS technique and further analyzed their antiviral potential using an in-silico molecular docking technique. Fold change analysis showed that in white arillus there were 21 upregulated compounds and 25 downregulated compounds. Metabolites that have high expression in white arillus tissue are ranxinic acid, nicotinic alcohol, stearic acid, 2-furan carboxaldehyde, and others. Six accessions from S. sumatrana based on PCA analysis and separate dendrogram according to the type of arillus, i.e., red and white arillus. Two compounds that act as antivirals found in this study are stearic acid and palmitic acid based on preliminary molecular docking studies. These two compounds could be used for further studies as a preventive measure against SARS-Cov-2 in the future, however, it needs further comprehensive and clinical analysis the future. In conclusion, metabolites in white arillus were distinctly different from red arillus of Snake fruits. In addition, studies on differential metabolite expression on two types of arillus (red/white) can be used as markers in identifying arillus color early by plant breeders.
This research was aimed to study the competitiveness of shorgum and Rottboellia exaltata L.f.. The experiment was done at glass house, experimental station of SEAMEO-BIOTROP, Bogor on 3 Oktober – 17 November 2009. The main plant was Sorghum and the weed was Rottboellia exaltata L.f.. the result showed that the sorghum was more competitive than Rottboellia exaltata L.f..
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