Microbial methane accumulations have been discovered in multiple coal-bearing basins over the past two decades. Such discoveries were originally based on unique biogenic signatures in the stable isotopic composition of methane and carbon dioxide. Basins with microbial methane contain either low-maturity coals with predominantly microbial methane gas or uplifted coals containing older, thermogenic gas mixed with more recently produced microbial methane. Recent advances in genomics have allowed further evaluation of the source of microbial methane, through the use of high-throughput phylogenetic sequencing and fluorescent in situ hybridization, to describe the diversity and abundance of bacteria and methanogenic archaea in these subsurface formations. However, the anaerobic metabolism of the bacteria breaking coal down to methanogenic substrates, the likely rate-limiting step in biogenic gas production, is not fully understood. Coal molecules are more recalcitrant to biodegradation with increasing thermal maturity, and progress has been made in identifying some of the enzymes involved in the anaerobic degradation of these recalcitrant organic molecules using metagenomic studies and culture enrichments. In recent years, researchers have attempted lab and subsurface stimulation of the naturally slow process of methanogenic degradation of coal.

A series of molecular and geochemical studies were performed to study microbial, coal bed methane formation in the eastern Illinois Basin. Results suggest that organic matter is biodegraded to simple molecules, such as H 2 and CO 2 , which fuel methanogenesis and the generation of large coal bed methane reserves. Small-subunit rRNA analysis of both the in situ microbial community and highly purified, methanogenic enrichments indicated that Methanocorpusculum is the dominant genus. Additionally, we characterized this methanogenic microorganism using scanning electron microscopy and distribution of intact polar cell membrane lipids. Phylogenetic studies of coal water samples helped us develop a model of methanogenic biodegradation of macromolecular coal and coal-derived oil by a complex microbial community. Based on enrichments, phylogenetic analyses, and calculated free energies at in situ subsurface conditions for relevant metabolisms (H 2 -utilizing methanogenesis, acetoclastic methanogenesis, and homoacetogenesis), H 2 -utilizing methanogenesis appears to be the dominant terminal process of biodegradation of coal organic matter at this location.

We describe a trapping and chromatography system that cryogenically removes CO(2) and N(2) generated from sample combustion in an elemental analyzer (EA) and introduces these gases into a low-flow helium carrier stream for isotopic analysis. The sample size required for measurement by this system (termed nano-EA/IRMS) is almost 3 orders of magnitude less than conventional EA analyses and fills an important niche in the range of analytical isotopic methods. Only 25 nmol of N and 41 nmol of C are needed to achieve 1.0 per thousand precision (2sigma) from a single measurement while larger samples and replicate measurements provide better precision. Analyses of standards demonstrate that nano-EA measurements are both accurate and precise, even on nanomolar quantities of C and N. Conventional and nano-EA measurements on international and laboratory standards are indistinguishable within analytical precision. Likewise, nano-EA values for international standards do not differ statistically from their consensus values. Both observations indicate the nano-EA measurements are comparable to conventional EA analyses and accurately reproduce the VPDB and AIR isotopic scales. Critical to the success of the nano-EA system is the procedure for removing the blank contribution to the measured values. Statistical treatment of uncertainties for this procedure yields an accurate method for calculating internal and external precision.

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Compound-specific isotope analysis (CSIA) of individual organic compounds is a powerful but underutilized tool in petroleum exploration. When integrated with other organic geochemical methodologies it can provide evidence of fluid histories including source, maturity, charge history and reservoir processes that can support field development planning and exploration efforts. The purpose of this chapter is to provide a review of the methodologies used for generating carbon and hydrogen isotope data for mid-and high-molecular-weight n-alkanes.We discuss the factors that control stable carbon and hydrogen isotope compositions of n-alkanes and related compounds in sedimentary and petroleum systems and review current and future applications of this methodology for petroleum exploration. We discuss basin-specific case studies that demonstrate the usefulness of CSIA either when addressing particular aspects of petroleum exploration (e.g. charge evaluation, source rock-oil correlation, and investigation of maturity and in-reservoir processes) or when this technique is used to corroborate interpretations from integrated petroleum systems analysis, providing unique insights which may not be revealed when using other methods. CSIA of n-alkanes and related n-alkyl structures can provide independent data to strengthen petroleum systems concepts from generation and expulsion of fluids from source rock, to charge history, connectivity, and in-reservoir processes.Gold Open Access: This article is published under the terms of the CC-BY 3.0 license.Petroleum geoscientists use organic geochemistry as an essential tool in oil and gas exploration and field development planning. Relatively low-cost, high-throughput bulk data are commonly used to screen for source rock quality (e.g. per cent total organic carbon (%TOC), hydrogen and oxygen indices) and thermal maturity (Tmax, vitrinite reflectance equivalent). More in-depth geochemical analytical techniques are used in the context of full fluid and reservoir properties to correlate source rocks and reservoir oils, to determine fluid generation and migration history, including presentday reservoir connectivity, and to understand in-reservoir processes, such as biodegradation of in-reservoir oils. These tools are especially powerful when coupled with other measurements made during the exploration and development process, such as compositional analysis during drilling, downhole fluid analysis and other wireline measurements, and pressure, volume, temperature (PVT) and chemical analyses, integrated in the context of geological static and reservoir dynamic models.Molecular biomarkers have been employed in petroleum exploration for several decades (Peters et al. 2005). The usefulness of bulk stable isotope measurements of gases and oils was well demonstrated in the petroleum industry through the decades of the 1970s and 1980s (Stahl 1977;Schoell 1984;Sofer 1984). However, the use of compound-specific isotopic composition of light hydrocarbons, alkanes and biomarkers is less common....