In this current work, two new-style DOPO-containing benzoxazines based on polyether-urea were successfully synthesized by a modified version via three-step procedures, and the corresponding polybenzoxazines with high toughness and flame retardancy were obtained by thermal activated polymerization. The single and double DOPO-containing benzoxazines were named as BzD1 and BzD2, respectively. The corresponding polymers followed were named as PBzD1 and PBzD2, respectively. The curing behaviors of the two new benzoxazines were investigated by differential scanning calorimetry. The thermal and mechanical properties of the materials were evaluated by TGA and dynamic mechanical analysis. The flame retardant properties were elucidated via limiting oxygen index (LOI). The toughness properties were expressed by bending tests. The results showed that the Yc for PBzD1 and PBzD2 were approximately 22.2% and 24%, respectively, distinctively higher than the value 2.57% of pristine polybenzoxazine PBz1, at 800 °C in N2 atmosphere. The Tgs of PBzD1 and PBzD2 distinctly increased by 42.8 °C and 20 °C, respectively, in comparison to −35 °C for pristine PBz1. The LOI values of PBzD1 and PBzD2 were 28.5 and 31, respectively. The length and weight-loss of PBzD1 and PBzD2 samples were significantly less than that of PBz1 when they were burned in the air environmental condition. The burning behavior demonstrated that the flame retardant properties was obviously improved as DOPO was introduced. All of the three specimens of PBz1, PBzD1 and PBzD2 presented excellent flexible property.