Sphingobacterium cladoniae sp. nov., isolated from lichen, Cladonia sp., and emended description of 
               
                  Sphingobacterium siyangense

Lee, Dong-Heon; Hur, Jae Seoun; Kahng, Hyung-Yeel

doi:10.1099/ijs.0.038844-0

Cited by 41 publications

(18 citation statements)

References 35 publications

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“…The DNA G+C content of strain THG-SQA8 T was 40.7 mol%, which conforms to the expected range of DNA G+C contents for the genus Sphingobacterium (Lee et al , 2013). The genomic DNA similarities were recorded as mean ± SD values.…”

supporting

confidence: 80%

“…Most species of the genus Sphingobacterium contain iso-C 15 : 0 , C 16 : 1 ω7 c , C 16 : 0 and C 17 : 0 3-OH as the main fatty acids (Feng et al , 2014; Liu et al , 2008). Members of the genus Sphingobacterium are Gram-stain-negative, aerobic, rod-shaped bacteria that are positive for catalase and oxidase, and contain menaquinone-7 (MK-7) as the characteristic respiratory quinone; the range of DNA G+C contents is 35–44 mol% (Lee et al , 2013; Wauters et al , 2012). In this study, a novel bacterium, designated strain THG-SQA8 T , was characterized using a polyphasic taxonomic approach.…”

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confidence: 99%

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Sphingobacterium mucilaginosum sp. nov., isolated from rhizosphere soil of a rose

Singh

Won

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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confidence: 80%

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confidence: 99%

Sphingobacterium mucilaginosum sp. nov., isolated from rhizosphere soil of a rose

Singh

Won

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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“…Members of the genus Sphingobacterium have been isolated from clinical materials, raw milk, lichen, fresh leaves, water, soil, compost, activated sludge and soybean plants. Currently, the genus Sphingobacterium includes 32 species with validly published names: S. multivorum, S. mizutaii and the type species, S. spiritivorum (Yabuuchi et al, 1983); S. faecium and S. thalpophilum (Takeuchi &Yokota, 1992); S. daejeonense (Kim et al, 2006); S. composti ; S. canadense (Mehnaz et al, 2007); S. siyangense (Liu et al, 2008); S. kitahiroshimense (Matsuyama et al, 2008); S. anhuiense (Wei et al, 2008); S. bambusae (Duan et al, 2009); S. shayense (He et al, 2010); S. kyonggiense (Choi & Lee, 2012); S. alimentarium and S. lactis (Schmidt et al, 2012); S. detergens (Marqués et al, 2012); S. nematocida (Liu et al, 2012); S. wenxiniae (Zhang et al, 2012); S. caeni (Sun et al, 2013); S. changzhouense (Liu et al, 2013); S. cladoniae (Lee et al, 2013); S. hotanense (Xiao et al, 2013); S. psychroaquaticum (Albert et al, 2013); S. thermophilum (Yabe et al, 2013); S. arenae (Jiang et al, 2014); S. ginsenosidimutans (Son et al, 2013) S. paludis (Feng et al, 2014); S. gobiense (Zhao et al, 2014); and S. mucilaginosum (Du et al, 2015).…”

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confidence: 99%

Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland

Long

Liu

Zhang

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, aerobic, rod-shaped, non-motile bacterial strain, designated SCU-B140T , was isolated from the insect Teleogryllus occipitalis. Phylogenetic analysis on the basis of 16S rRNA gene sequence showed that strain SCU-B140 T belonged to the genus Sphingobacterium. Sphingobacterium bambusae KCTC 22814 T (97.87 %) was identified as the most closely related phylogenetic neighbour of strain SCU-B140T . The novel strain was able to grow at salt concentrations of 0-4 % (w/v), at temperatures of 10-40 8C, and at a pH of 6.0-9.0. The major cellular fatty acids were iso-C 15 : 0 , summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 v7c), C 16 : 0 , C 16 : 0 3-OH, C 18 : 0 and C 14 : 0 . The major polar lipids consisted of phosphatidylethanolamine, three unknown aminophospholipids, an unknown glycolipid and three unknown polar lipids. MK-7 was the major isoprenoid quinone. The DNA G+C content was 41.2 mol%. The DNA-DNA relatedness value between SCU-B140 T and S. bambusae KCTC 22814T was found to be 30.15 %. According to these results, strain SCU-B140 T represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium griseoflavum sp. nov. is proposed. The type strain is SCU-B140 T (5KCTC 42158 T 5CGMCC

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“…Sphingobacterium is a rod-shaped, non-spore-producing, gram-negative bacterium, and the GC content of its DNA ranges from 35 to 44 mol% (Lee, et al, 2013). The genus Sphingobacterium was established by Yabuuchi (Yabuuchi, et al, 1983) in 1983 and comprises bacterial species whose membranes contain high concentrations of shingolipids.…”

Section: Introductionmentioning

confidence: 99%

Complete Genome Sequence of Sphingobacterium sp. Strain CZ-2T Isolated from Tobacco Leaves Infected with Wildfire Disease

Cai

Wang

et al. 2019

Preprint

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Background Sphingobacterium is a class of Gram-negative, non-fermentative bacilii, and rarely involved in human infections. It is characterized by a large number of cellular membrane sphingophospolipids. Due to its wide ecological distribution and oil degradation ability, environmental microbiologists have paid much attention to it. Results A novel gram-negative bacterium, designated CZ-2 T , was isolated from a sample of tobacco leaves infected with wildfire disease in Guiyang County, Chenzhou City, Hunan Province, China, and its phylogenetic position was investigated by GC content determination, PCR amplification, sequencing and phylogenetic analysis. Growth occurred on TGY medium at 30 °C and pH 7.0. The GC content of the DNA of strain CZ-2 T is 40.68 mol%. Genome relatedness, rDNA phylogeny and chemotaxonomic characteristics all indicate that strain CZ-2 T represents a novel species of the genus Sphingobacterium . We propose the name Sphingobacterium. tobaci sp. nov., with CZ-2 T as the type strain. Third-generation sequencing (TGS) and next-generation sequencing (NGS) were used to derive a finished genome sequence for strain CZ-2 T , consisting of a circular chromosome 3,925,977 bp in size. The genome of strain CZ-2 T features 3,462 protein-encoding and 50 tRNA-encoding genes. Unigenes were annotated by matching against Clusters of Orthologous Groups of proteins (COG; 2,021 genes), Gene Ontology (GO; 1,952 genes) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases (1,380 genes). Comparison of the predicted proteome of CZ-2 T with those of other Sphingobacterium identified 677 species-specific proteins that may contribute to the adaptation of CZ-2 T to its native environment. Conclusions As the first report of a Sphingobacterium genome sequenced by NGS and TGS, our work will serve as a useful reference for subsequent sequencing and mapping efforts for additional strains and species within this genus.

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Sphingobacterium cladoniae sp. nov., isolated from lichen, Cladonia sp., and emended description of Sphingobacterium siyangense

Abstract: ). An emended description of Sphingobacterium siyangense is also proposed.

Cited by 41 publications

References 35 publications

Sphingobacterium mucilaginosum sp. nov., isolated from rhizosphere soil of a rose

Sphingobacterium mucilaginosum sp. nov., isolated from rhizosphere soil of a rose

Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland

Complete Genome Sequence of Sphingobacterium sp. Strain CZ-2T Isolated from Tobacco Leaves Infected with Wildfire Disease

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