The seasonal and interannual variability of chlorophyll in the Gulf of Mexico open waters is studied using a three‐dimensional coupled physical‐biogeochemical model. A 5 years hindcast driven by realistic open‐boundary conditions, atmospheric forcings, and freshwater discharges from rivers is performed. The use of recent in situ observations allowed an in‐depth evaluation of the model nutrient and chlorophyll seasonal distributions, including the chlorophyll vertical structure. We find that different chlorophyll patterns of temporal variability coexist in the deep basin which thereby cannot be considered as a homogeneous region with respect to chlorophyll dynamics. A partitioning of the Gulf of Mexico open waters based on the winter chlorophyll concentration increase is then proposed. This partition is basically explained by the amount of nutrients injected into the euphotic layer which is highly constrained by the dynamic of the winter mixed layer. The seasonal and interannual variability appears to be affected by the variability of atmospheric fluxes and mesoscale dynamics (Loop Current eddies in particular). Finally, estimates of primary production in the deep basin are provided.

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The objective of this work was to estimate the changes in abundance and composition of phytoplankton in a coastal lagoon in Baja California, México during neap-spring tide conditions. Sampling was conducted from the 7 th to the 16 th of October 2004. Surface water was collected at 18 stations distributed across the bay during day time at high tide. Also, a time series was collected at a fixed station; surface water was collected every two hours from 8:00 to 18:00. High temperatures, low salinities and low nutrient concentrations at the oceanic end indicated weak or non upwelling conditions during this period. The phytoplankton community was characterized using an inverted microscope and the chemical taxonomy program CHEMTAX, based on pigment concentration estimated by high performance liquid chromatography (HPLC). The phytoplankton concentration was two times lower during this period than during periods of upwelling in the same year. Cryptophytes and diatoms were the most abundant groups estimated by CHEMTAX. Statistical analyses of the effect of tidal conditions on phytoplankton composition indicate that Zone A is strongly affected by tides, and that tidal effects are lessened at the inner zones. Differences in phytoplankton abundance between zones and between tidal conditions indicate that phytoplankton distribution is patchy in the lagoon.

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Located in the southern section of the California Current System (CCS), the coastal zone off the Baja California peninsula is an upwelling system that sustains a rich, diverse, and highly productive ecosystem. Such highprimary production is largely due to wind-driven coastal upwelling taking place mostly during the spring and early summer seasons (Linacre et al., 2010a). Besides, this region is considered an oceanographic transition zone, where the cold and low-salinity water of the California Current meets seasonally with warmer and saltier waters of tropical/subtropical origin (Durazo, 2015; Durazo et al., 2010; Kurczyn et al., 2019). Given that most of the biological and hydrographic variability in this region occurs at the seasonal and inter-annual time scales, it is valuable to understand how the system functioning is impacted by any other phenomena that increase or decrease variability at these time scales.

The Gulf of Mexico (GoM) is one of the most dynamic marginal seas in the world owing to the intrusion of the Loop Current and the shedding of anticyclonic eddies (LCE) that travel westward across the Gulf. However, the impacts of these mesoscale dynamics on the supply and removal of bioessential trace metals in surface waters remain unclear. We study the impact of mesoscale eddies on the distribution of dissolved nickel (Ni), a biologically active element scarcely studied in the region. The vertical distribution of Ni was determined in the deep-water region of the GoM during summer of 2017, when two anticyclonic LCE (Quantum and Poseidon) were present. Nutrient-like profiles of Ni in the GoM resemble those from the Atlantic Ocean, but they showed high spatial variability within the first 1000 m, which was associated with the impact of mesoscale eddies. Similarly to subtropical gyres, macronutrients were almost depleted in surface waters, while Ni never fell below 1.51 nmol kg-1, suggesting low Ni lability or alternatively, slow biological uptake compared to that of macronutrients. In particular, lowest levels of Ni and macronutrients (PO4 and NO3) were recorded in surface waters of the anticyclonic eddies and the Loop Current area. Anticyclonic LCEs deepened these Ni-poor waters pushing the Ni-rich core of Tropical Atlantic Central Water up to 600 m, whereas its shallowest position (up to 200 m) was recorded under cyclonic conditions in Campeche Bay. This eddy-induced vertical displacement of water masses also affected the integrated Ni and macronutrient concentrations in the upper 350 m but without modifying their stoichiometries. We suggest that a significant decrease in surface inventories of Ni and macronutrient in areas impacted by LCEs is a consequence of the trapping of the water within eddies, the biological uptake of Ni and macronutrients combined with their limited replenishment from below, which likely affects autotrophic groups. In conclusion, the mesoscale dynamic permanently present in the GoM play an important role in modifying the vertical distribution of Ni and macronutrients as well as their availability in the upper water column of this marginal sea.

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A synoptic gulf-wide isoscape of carbon (δ13C) and nitrogen (δ15N) in the Gulf of Mexico based on mesozooplankton (335-1000 um) was used as a proxy for the isotopic baseline and for calculating regional contributions of dissolved inorganic nitrogen sources. Mesozooplankton were sampled at 0-200 m (depth permitting) during the XIXIMI-06 and GOMECC-3 cruises held during the summer of 2017. A striking latitudinal gradient was found in δ15N values of zooplankton, with the highest values (10.4 ± 1.2‰) found over the northern shelf, and lowest values in the central, oligotrophic gulf (1.9 ± 0.5‰). To estimate the fractional contribution of potential nitrogen sources, the gulf was divided into six regions based on the spatial distribution of surface Chl-a, SST from remote sensing products and likely region-specific source contributions. A literature survey of (δ13C and δ15N values of particulate organic matter was used to characterize region-specific endpoint isotope ratios for use in a Bayesian isotope mixing model. Regional differences in δ15N values and the results of mixing models indicated nitrogen fixation is most likely an important source (45-74% contribution) of new nitrogen in the oceanic regions of the Gulf, the Loop Current and the Yucatan Shelf. In the oligotrophic gulf, the potential input of relatively light nitrate that reflects remineralization of surface layer POM or the excretion of light nitrogen by heterotrophs was insufficient to explain the low δ15N values found in the central Gulf, although it could account for about 40% of the N supporting secondary production. The high nitrogen isotope ratios found in the northern shelf were attributed to denitrified N (60%) and the inflow of heavy nitrogen from the Mississippi-Atchafalaya river system. Our results support the potential importance of fixed nitrogen in the deep waters of the Gulf of Mexico during the summer, characteristic for its highly stratified surface waters.