Five decades ago, a landmark paper in Science titled The Cave Environment heralded caves as ideal natural experimental laboratories in which to develop and address general questions in geology, ecology, biogeography, and evolutionary biology. Although the ‘caves as laboratory’ paradigm has since been advocated by subterranean biologists, there are few examples of studies that successfully translated their results into general principles. The contemporary era of big data, modelling tools, and revolutionary advances in genetics and (meta)genomics provides an opportunity to revisit unresolved questions and challenges, as well as examine promising new avenues of research in subterranean biology. Accordingly, we have developed a roadmap to guide future research endeavours in subterranean biology by adapting a well‐established methodology of ‘horizon scanning’ to identify the highest priority research questions across six subject areas. Based on the expert opinion of 30 scientists from around the globe with complementary expertise and of different academic ages, we assembled an initial list of 258 fundamental questions concentrating on macroecology and microbial ecology, adaptation, evolution, and conservation. Subsequently, through online surveys, 130 subterranean biologists with various backgrounds assisted us in reducing our list to 50 top‐priority questions. These research questions are broad in scope and ready to be addressed in the next decade. We believe this exercise will stimulate research towards a deeper understanding of subterranean biology and foster hypothesis‐driven studies likely to resonate broadly from the traditional boundaries of this field.

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Citation: Pellegrini TG, Sales LP, Aguiar P, Ferreira RL (2016) Linking spatial scale dependence of land-use descriptors and invertebrate cave community composition. Subterranean Biology 18: 17-38. doi: 10.3897/subtbiol.18.8335 AbstractPatterns of biodiversity respond to habitat disturbances and different land-uses. Those patterns possibly vary according to the spatial scale under analysis. Although other studies have shown such responses for different systems, no study has ever demonstrated spatial-scale influences in subterranean terrestrial communities. Therefore, the objective of this paper was to analyze how land use and cave physical structure could influence the terrestrial cave invertebrate species composition. We also determined the influence of different spatial scale on the structure of invertebrate cave composition. We collected environmental data at local scale (e.g. cave size, substrate and environmental stability). For spatial scale we determined land uses at three different landscape scales; we gathered these data into circular areas of different sizes (50, 100 and 250 meters) with centroids in the cave entrances. We finally performed three Distance Based Linear Modeling analyses to test for differences among the predictability of environmental variables when comparing different spatial scales. The best explanatory variable for cave invertebrate similarities was the percentage of covering of the external environment by limestone outcrops. We confirm the scale-dependence hypothesis through the different patterns showed among distinct buffer areas. Models become more precise when larger scales were analyzed to explain cave invertebrate composition. This suggests that larger scales capture important environmental features that explain the cave fauna similarities more precisely. Additionally, we found a strong influence of limestone outcrops at all landscape scale structuring cave communities.

Lapa Nova is a dolomitic cave about 4.5 km long located in northwestern Minas Gerais state, Brazil. The cave experiences intense tourism, concentrated over a single period of the year, during the Feast of Our Lady of Lapa. In order to evaluate the impacts felt by the invertebrate community from this tourism, a new methodology was proposed. Four types of areas (intense visitation area, outlying visitation areas, moderate visitation areas and no-visitation areas) were sampled for invertebrates. There was one sampling prior and another on the last day of the 128 th feast, to evaluate the effects of visitation on cave-dwelling invertebrates. Results show that invertebrate populations residing in more intensely visited areas of the cave undergo changes in distribution following the event. As a consequence of tourism, invertebrates shift to outlying locations from the visited area, which serve as refuges to the communities. Apparently, the fact that there are places inside Lapa Nova inaccessible to tourists reduces the impact suffered by the invertebrate community, as those sites serve as refuges for cave-dwelling organisms during the pilgrimage. A proper management plan was devised for the tourism/religious use of the cave. It consists basically of delimiting marked pathways for tourists, allowing invertebrates to seek shelter at locations outside visited areas and keeping no-visitation areas off-limits to tourism based on the results of the visitation effects on cave-dwelling invertebrates.

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