A key question in many genetic studies on marine organisms is how to interpret a low but statistically significant level of genetic differentiation. Do such observations reflect a real phenomenon, or are they caused by confounding factors such as unrepresentative sampling or selective forces acting on the marker loci? Further, are low levels of differentiation biologically trivial, or can they represent a meaningful and perhaps important finding? We explored these issues in an empirical study on coastal Atlantic cod, combining temporally replicated genetic samples over a 10-year period with an extensive capture-mark-recapture study of individual mobility and population size. The genetic analyses revealed a pattern of differentiation between the inner part of the fjord and the open skerries area at the fjord entrance. Overall, genetic differentiation was weak (average F(ST)  = 0.0037), but nevertheless highly statistical significant and did not depend on particular loci that could be subject to selection. This spatial component dominated over temporal change, and temporal replicates clustered together throughout the 10-year period. Consistent with genetic results, the majority of the recaptured fish were found close to the point of release, with <1% of recaptured individuals dispersing between the inner fjord and outer skerries. We conclude that low levels of genetic differentiation in this marine fish can indeed be biologically meaningful, corresponding to separate, temporally persistent, local populations. We estimated the genetically effective sizes (N(e) ) of the two coastal cod populations to 198 and 542 and found a N(e) /N (spawner) ratio of 0.14.

Marine protected areas (MPAs) are increasingly implemented as tools to conserve and manage fisheries and target species. Because there are opportunity costs to conservation, there is a need for science-based assessment of MPAs. Here, we present one of the northernmost documentations of MPA effects to date, demonstrated by a replicated before–after control-impact (BACI) approach. In 2006, MPAs were implemented along the Norwegian Skagerrak coast offering complete protection to shellfish and partial protection to fish. By 2010, European lobster (Homarus gammarus) catch-per-unit-effort (CPUE) had increased by 245 per cent in MPAs, whereas CPUE in control areas had increased by 87 per cent. Mean size of lobsters increased by 13 per cent in MPAs, whereas increase in control areas was negligible. Furthermore, MPA-responses and population development in control areas varied significantly among regions. This illustrates the importance of a replicated BACI design for reaching robust conclusions and management decisions. Partial protection of Atlantic cod (Gadus morhua) was followed by an increase in population density and body size compared with control areas. By 2010, MPA cod were on average 5 cm longer than in any of the control areas. MPAs can be useful management tools in rebuilding and conserving portions of depleted lobster populations in northern temperate waters, and even for a mobile temperate fish species such as the Atlantic cod.

We estimated the spatial scale of genetically distinguishable populations of coastal Atlantic cod Gadus morhua using microsatellite DNA markers. Significant overall heterogeneity in allele frequencies was found among 5 cod samples (n = 493) along a 79 km segment of the Norwegian Skagerrak coast (F ST = 0.0013; p = 0.021). Most (3 out of 4) samples separated by less than 30 km were genetically highly similar (F ST < 0), whereas more distantly separated samples were typically genetically different. This genetic differentiation pattern indicates a patchy population structure with local coastal cod populations being limited in geographic extent to approx. 30 km or less. The spatial structure is thus on the scale of local fjords, suggesting a role for local topography in shaping population structure. The population structuring of coastal cod is more fine-scaled than hitherto reported, but is consistent with mark-recapture studies and data on egg distributions, and emphasises the need to focus on local populations in the management of marine fishes.

Coastal marine species with pelagic egg and larval stages, such as the Atlantic cod Gadus morhua, can be structured into genetically distinct local populations on a surprisingly small geographic scale considering their dispersal potential. Mechanisms responsible for such small-scale genetic structure may involve homing of adults to their natal spawning grounds, but also local retention of pelagic eggs and larvae. For example, spawning within sheltered fjord habitats is expected to favour local retention of early life stages. Here, we studied the distribution of cod eggs along inshoreoffshore transects in 20 Norwegian fjords. The general pattern exhibited across all fjords was a higher concentration of cod eggs inside the fjords than further offshore. In particular, fjords with shallow sills (model threshold 37 m) show an abrupt reduction in egg density over the sill. This study provides empirical support for an offspring retention hypothesis, which may help to explain the maintenance of local population structure in pelagic marine systems.

Abstract. Until the last decade it was assumed that most marine species have pronounced gene flow over vast areas, largely because of their potential for dispersal during early life stages. However, recent genetic, modeling, and field studies have shown that marine populations may be structured at scales that are inconsistent with extensive dispersal of eggs and larvae. Such findings have stimulated the birth of new studies explaining the mechanisms that promote population structure and isolation in the oceans, in the face of high potential for dispersal. Here we study the vertical and horizontal distribution of cod (Gadus morhua) eggs in relation to small-scale circulation and water column hydrography in a coastal location of southern Norway. Previous studies conducted in this region have shown that cod populations inhabiting fjord locations, which are on average 30 km apart, are genetically differentiated, a remarkable outcome considering that Atlantic cod have pelagic egg stages and long pelagic larval duration. We document that cod eggs are found in greater abundance in shallow water layers, which on average are flowing up the fjord (away from the open ocean), and in the inner portion of the fjord, which is subject to lower current speeds compared to the outer or mouth of the fjord. Eggs were found to be neutrally buoyant at shallow depths, a trait that also favors local retention, given the local circulation. The same patterns held during two environmentally contrasting years. These results strongly suggest that population structure of Atlantic cod is favored and maintained by a balance between water circulation and egg characteristics.