Earlier observations in mangrove sediments of Goa, India have shown denitrification to be a major pathway for N loss1. However, percentage of total nitrate transformed through complete denitrification accounted for <0–72% of the pore water nitrate reduced. Here, we show that up to 99% of nitrate removal in mangrove sediments is routed through dissimilatory nitrate reduction to ammonium (DNRA). The DNRA process was 2x higher at the relatively pristine site Tuvem compared to the anthropogenically-influenced Divar mangrove ecosystem. In systems receiving low extraneous nutrient inputs, this mechanism effectively conserves and re-circulates N minimizing nutrient loss that would otherwise occur through denitrification. In a global context, the occurrence of DNRA in mangroves has important implications for maintaining N levels and sustaining ecosystem productivity. For the first time, this study also highlights the significance of DNRA in buffering the climate by modulating the production of the greenhouse gas nitrous oxide.

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Net nitrous oxide production and denitrification activity were measured in two mangrove ecosystems of Goa, India. The relatively pristine site Tuvem was compared to Divar which is prone to high nutrient input. Stratified sampling at 2 cm intervals within the 0-10 cm depth range showed that N 2 O production at both the locations decreased with depth. Elevated denitrification activity at Divar resulted in maximum production of up to 1.95 nmol N 2 O-N g -1 h -1 at 2-4 cm which was 3 times higher than at Tuvem. Detailed investigations to understand the major pathway contributing to nitrous oxide production carried out at Tuvem showed that incomplete denitrification was responsible for up to 43-93% of N 2 O production. N 2 O production rates closely correlated to nitrite concentration (n=15; r=-0.47; p<0.05) and denitrifier abundance (r=0.55; p<0.05) suggesting that nitrite utilisation by microbial activity leads to N 2 O production. Nitrous oxide production through nitrification was below detection affirming that denitrification is the major pathway responsible for production of the greenhouse gas. Net N 2 O production in these mangrove systems are comparatively higher than those reported from other natural estuarine sediments and therefore warrant mitigation measures.

To appreciate differences in benthic bacterial community composition at the relatively pristine Tuvem and the anthropogenically-influenced Divar mangrove ecosystems in Goa, India, parallel tag sequencing of the V6 region of 16S rDNA was carried out. We hypothesize that availability of extraneously-derived anthropogenic substrates could act as a stimulatant but not a deterrent to promote higher bacterial diversity at Divar. Our observations revealed that the phylum Proteobacteria was dominant at both locations comprising 43–46% of total tags. The Tuvem ecosystem was characterized by an abundance of members belonging to the class Deltaproteobacteria (21%), ~ 2100 phylotypes and 1561 operational taxonomic units (OTUs) sharing > 97% similarity. At Divar, the Gammaproteobacteria were ~ 2× higher (17%) than at Tuvem. A more diverse bacterial community with > 3300 phylotypes and > 2000 OTUs mostly belonging to Gammaproteobacteria and a significantly higher DNT (n = 9, p < 0.001, df = 1) were recorded at Divar. These findings suggest that the quantity and quality of pollutants at Divar are perhaps still at a level to maintain high diversity. Using this technique we could show higher diversity at Divar with the possibility of Gammaproteobacteria contributing to modulating excess nitrate.

Co immobilization by two manganese oxidizing isolates from Carlsberg Ridge waters (CR35 and CR48) was compared with that of Mn at same molar concentrations. At a lower concentration of 10 μM, CR35 and CR48 immobilized 22 and 23 fM Co cell(-1) respectively, which was 1.4 to 2 times higher than that of Mn oxidation, while at 10 mM the immobilization was 15-69 times lower than that of Mn. Scanning electron microscope and energy dispersive X-ray analyses of intact bacterial cells grown in 1 mM Co revealed Co peaks showing extracellular binding of the metal. However, it was evident from transmission electron microscope analyses that most of the sequestered Co was bound intracellularly along the cell membrane in both the isolates. Change in morphology was one of the strategies bacteria adopted to counter metal stress. The cells grew larger and thus maintained a lower than normal surface area-volume ratio on exposure to Co to reduce the number of binding sites. An unbalanced growth with increasing Co additions was observed in the isolates. Cells attained a length of 10-18 μm at 10 mM Co which was 11-15 times the original cell length. Extensive cell rupture indicated that Co was harmful at this concentration. It is apparent that biological and optimal requirement of Mn is more than Co. Thus, these differences in the immobilization of the two metals could be driven by the differences in the requirement, cell physiology and the affinities of the isolates for the concentrations of the metals tested.

The HOBAS aeration system was tested to compare changes in environmental and bacteriological parameters in ponds growing Penaeus monodon during a single production cycle. The stocking density in the aerated pond was doubled to 12 post-larvae (PL) m(-2) in contrast to the non-aerated pond with 6 (PL) m(-2). Microbial abundance in the ponds ranged between 10(5-6) cells ml(-1). Among the physiological groups of bacteria enumerated, the heterotrophs dominated with an abundance of 10(4) CFU ml(-1). Of the nitrogen and sulfur cycle bacteria, the nitrifiers flourished in the aerated pond and could maintain ammonia-N concentration within permissible levels. Bacterial activity also maintained sulfide concentrations at < 0.03 mg l(-1). Non-aerated conditions promoted denitrification maintaining nitrate concentration between 0.32 and 0.98 microM NO(3)(-)-N l(-1). However, a marked increase in ammonium content was observed in the non-aerated pond at the end of the culture period. Thus in high-density ponds, the aerators served to stimulate bacterial growth and activity which consequently maintained the quality of the water to match that of low-density ponds. Accordingly, these aerators could be effectively used to sustain higher yields. The effluent from the aerated pond is less likely to alter the redox balance of the receiving waters.

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