Pseudo-absence selection for spatial distribution models (SDMs) is the subject of ongoing investigation. Numerous techniques continue to be developed, and reports of their effectiveness vary. Because the quality of presence and absence data is key for acceptable accuracy of correlative SDM predictions, determining an appropriate method to characterise pseudo-absences for SDM’s is vital. The main methods that are currently used to generate pseudo-absence points are: 1) randomly generated pseudo-absence locations from background data; 2) pseudo-absence locations generated within a delimited geographical distance from recorded presence points; and 3) pseudo-absence locations selected in areas that are environmentally dissimilar from presence points. There is a need for a method that considers both geographical extent and environmental requirements to produce pseudo-absence points that are spatially and ecologically balanced. We use a novel three-step approach that satisfies both spatial and ecological reasons why the target species is likely to find a particular geo-location unsuitable. Step 1 comprises establishing a geographical extent around species presence points from which pseudo-absence points are selected based on analyses of environmental variable importance at different distances. This step gives an ecologically meaningful explanation to the spatial range of background data, as opposed to using an arbitrary radius. Step 2 determines locations that are environmentally dissimilar to the presence points within the distance specified in step one. Step 3 performs K-means clustering to reduce the number of potential pseudo-absences to the desired set by taking the centroids of clusters in the most environmentally dissimilar class identified in step 2. By considering spatial, ecological and environmental aspects, the three-step method identifies appropriate pseudo-absence points for correlative SDMs. We illustrate this method by predicting the New Zealand potential distribution of the Asian tiger mosquito (Aedes albopictus) and the Western corn rootworm (Diabrotica virgifera virgifera).
Natural and human‐induced events are continuously altering the structure of our landscapes and as a result impacting the spatial relationships between individual landscape elements and the species living in the area. Yet, only recently has the influence of the surrounding landscape on invasive species spread started to be considered. The scientific community increasingly recognizes the need for broader modeling framework that focuses on cross‐study comparisons at different spatiotemporal scales. Using two illustrative examples, we introduce a general modeling framework that allows for a systematic investigation of the effect of habitat change on invasive species establishment and spread. The essential parts of the framework are (i) a mechanistic spatially explicit model (a modular dispersal framework—MDIG) that allows population dynamics and dispersal to be modeled in a geographical information system (GIS), (ii) a landscape generator that allows replicated landscape patterns with partially controllable spatial properties to be generated, and (iii) landscape metrics that depict the essential aspects of landscape with which dispersal and demographic processes interact. The modeling framework provides functionality for a wide variety of applications ranging from predictions of the spatiotemporal spread of real species and comparison of potential management strategies, to theoretical investigation of the effect of habitat change on population dynamics. Such a framework allows to quantify how small‐grain landscape characteristics, such as habitat size and habitat connectivity, interact with life‐history traits to determine the dynamics of invasive species spread in fragmented landscape. As such, it will give deeper insights into species traits and landscape features that lead to establishment and spread success and may be key to preventing new incursions and the development of efficient monitoring, surveillance, control or eradication programs.
This study provides a bio-economic assessment of the global climate suitability and probabilistic crop-loss estimates attributable to wheat leaf rust. We draw on a purpose-built, spatially-explicit, eco-climatic suitability model for wheat leaf rust to estimate that 94.4% of global wheat production is vulnerable to the disease. To reflect the spatio-temporal variation in leaf rust losses, we used a probabilistic approach to estimate a representative rust loss distribution based on long-term, state-level annual U.S. loss estimates. Applying variants of this representative loss distribution to selected wheat production areas in 15 epidemiological zones throughout the world, we project global annual average losses of 8.6 million metric tons of grain for the period 2000-2050 based on a conservative, base-line scenario, and 18.3 million metric tons based on a high-loss scenario; equivalent to economic losses ranging from US$1.5 to US$3.3 billion per year (2016 U.S. prices). Even the more conservative base-line estimate implies that a sustained, worldwide investment of US$50.5 million per year in leaf rust research is economically justified.
In flammable shrublands fire size often depends on local management. Policy and land use change can drastically alter fire regimes, affecting livelihoods, biodiversity, and carbon storage. In Ethiopia, burning of vegetation is banned, but the burn ban is more strongly enforced inside the Bale Mountains National Park. We investigated if and how policy and land use change have affected fire regimes inside/outside the park. The park was established in 1969, and both studied areas have been part of a new REDD+ project since 2013. Our hypothesis is that burnt heathland stands are nonflammable and act as fuel breaks, and hence that reduced ignition rates leads to larger fires. To quantify change we analyzed remote-sensed imagery from 10 fire-seasons between 1968 and 2017, quantifying sizes of resprouting Erica stands and recording their postfire age. To elucidate underlying mechanisms of change we interviewed 41 local smallholders. There was a five order of magnitude variation in patch size (< 0.01-> 1000 ha). A significant interaction was found between year and site (inside/outside park) in explaining patch size, indicating that the park establishment has affected fire size. Inside the park there was a tendency of patch size increase and outside a clear decrease. Especially the largest fires (> 100 ha) increased in numbers inside the park but not outside. Respondents confirmed that large fires have increased in frequency and attributed this mainly to lack of fuel breaks and the fact that fires today are ignited in a more uncontrolled manner later in the dry season. Outside the park respondents explained that fires have become smaller because of increased ignition and intensified grazing. Both situations degrade pasture and threaten Erica shrub survival. For flammable ecosystems, REDD+ fire-exclusion policies need updating, and in this case complemented with a community-based fire management program making use of the vivid local traditional fire knowledge.
Correlative species distribution models (SDMs) are increasingly being used to predict suitable insect habitats. There is also much criticism of prediction discrepancies among different SDMs for the same species and the lack of effective communication about SDM prediction uncertainty. In this paper, we undertook a factorial study to investigate the effects of various modeling components (species-training-datasets, predictor variables, dimension-reduction methods, and model types) on the accuracy of SDM predictions, with the aim of identifying sources of discrepancy and uncertainty. We found that model type was the major factor causing variation in species-distribution predictions among the various modeling components tested. We also found that different combinations of modeling components could significantly increase or decrease the performance of a model. This result indicated the importance of keeping modeling components constant for comparing a given SDM result. With all modeling components, constant, machine-learning models seem to outperform other model types. We also found that, on average, the Hierarchical Non-Linear Principal Components Analysis dimension-reduction method improved model performance more than other methods tested. We also found that the widely used confusion-matrix-based model-performance indices such as the area under the receiving operating characteristic curve (AUC), sensitivity, and Kappa do not necessarily help select the best model from a set of models if variation in performance is not large. To conclude, model result discrepancies do not necessarily suggest lack of robustness in correlative modeling as they can also occur due to inappropriate selection of modeling components. In addition, more research on model performance evaluation is required for developing robust and sensitive model evaluation methods. Undertaking multi-scenario species-distribution modeling, where possible, is likely to mitigate errors arising from inappropriate modeling components selection, and provide end users with better information on the resulting model prediction uncertainty.
Invasive plants are an ongoing subject of interest in North American forests, owing to their impacts on forest structure and regeneration, biodiversity, and ecosystem services. An important component of studying and managing forest invaders involves knowing where the species are, or could be, geographically located. Temporal and environmental context, in conjunction with spatially-explicit species occurrence information, can be used to address this need. Here, we predict the potential current and future distributions of four forest plant invaders in Minnesota: common buckthorn ( Rhamnus cathartica ), glossy buckthorn ( Frangula alnus ), garlic mustard ( Alliaria petiolata ), and multiflora rose ( Rosa multiflora ). We assessed the impact of two different climate change scenarios (IPCC RCP 6.0 and 8.5) at two future timepoints (2050s and 2070s) as well as the importance of occurrence data sources on the potential distribution of each species. Our results suggest that climate change scenarios considered here could result in a potential loss of suitable habitat in Minnesota for both buckthorn species and a potential gain for R. multiflora and A. petiolata . Differences in predictions as a result of input occurrence data source were most pronounced in future climate projections.
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