N onpoint source pollution is transported primarily by runoff from urban, agricultural, mining areas, and construction sites. Agricultural activities are being increasingly blamed for deterioration of surface and ground water resources in the United States. Significant progress has been made in developing technologies for controlling point sources, while until recently nonpoint sources of pollution had been relatively neglected. Runoff carries sediment, organic matter, bacteria, pesticides, metals, nutrients, and other chemicals. Nutrients, primarily nitrogen (N) and phosphorus (P), can be a major problem because they can cause eutrophic algae growth which may reduce oxygen availability and increase turbidity in water bodies. Livestock systems, which utilize pastureland for grazing animals and cropland for disposal of manure waste, are one segment of agricultural production for which the extent of nonpoint source pollution is neither clearly defined nor the effectiveness of best management practices (BMPs) adequately demonstrated. In 1983, a study by the U.S. Environmental Protection Agency on the decline in water quality of the Chesapeake Bay indicated that point and nonpoint sources of pollution were among the main causes of the Bay's decline (USEPA, 1983). In particular, the study indicated that nonpoint sources contributed about 67% of the N and 39% of the P entering the Bay. Furthermore, agriculture was estimated to be responsible for 60 and 27% of the N and P loadings from nonpoint sources, respectively. Consequently, in December 1987, the Governors of Pennsylvania, Maryland, and Virginia, the mayor of the District of Columbia, and the Administrator of the EPA pledged to address nonpoint sources as well as other sources of pollution to restore and protect the Chesapeake Bay. This commitment, known as the Chesapeake Bay Agreement of 1987, requires the signatory States to implement cost-sharing programs targeted at reducing nonpoint source pollution of the Bay and its tributaries. Virginia's agricultural cost-sharing program was initiated in response to the Chesapeake Bay program and was designed to encourage voluntary implementation of BMPs such as conservation tillage and installation of animal waste facilities by farmers. Animal waste management involves both storage and proper utilization of waste as fertilizer on agricultural land in order to improve crop production and reduce transport of pollutants by runoff. Timing, method, and rate of application are controllable management factors that influence both the effectiveness of the animal waste as a fertilizer and the degree to which runoff pollution is prevented (Sharpley et al., 1994). While there is documented evidence on the water quality advantages of BMPs on field-size plots, the effectiveness of BMPs, especially animal waste management practices, on large watersheds with varying topography, land use, soils, and geology is relatively unknown. Thus, a comprehensive nonpoint source monitoring program was undertaken in 1986 to quantify