In maturing T lineage cells, the helix-loop-helix protein E47 has been shown to enforce a critical proliferation and developmental checkpoint commonly referred to as  selection. To examine how E47 regulates cellular expansion and developmental progression, we have used an E2A-deficient lymphoma cell line and DNA microarray analysis to identify immediate E47 target genes. Hierarchical cluster analysis of gene expression patterns revealed that E47 coordinately regulates the expression of genes involved in cell survival, cell cycle progression, lipid metabolism, stress response, and lymphoid maturation. These include Plc␥2, Cdk6, CD25, Tox, Gadd45a, Gadd45b, Gfi1, Gfi1b, Socs1, Socs3, Id2, Eto2, and Xbp1. We propose a regulatory network linking Janus kinase (JAK)͞signal transducer and activator of transcription (STAT)-mediated signaling, E47, and suppressor of cytokine signaling (SOCS) proteins in a common pathway. Finally, we suggest that the aberrant activation of Cdk6 in E47-deficient T lineage cells contributes to the development of lymphoid malignancy.L ymphocyte development is regulated, in part, by a distinct class of helix-loop-helix (HLH) proteins, named E proteins (1). Four E proteins, E12, E47, E2-2, and HEB, are expressed in developing lymphocytes. E12 and E47 are encoded by one gene, designated as E2A, and arise through differential splicing in an exon encoding the HLH domain. E2A-deficient mice exhibit a complete block in B cell development at the onset of lineage commitment (2-4). T cell development is partially blocked in E2A-deficient mice before the onset of T cell receptor (TCR)  V(D)J gene rearrangement (5-7).E proteins, and E2A proteins in particular, play critical roles in regulating developmental progression at the pre-TCR and TCR checkpoints (8, 9). Signals emanating from the pre-TCR and TCR complex act to suppress E protein DNA-binding activity, induce the expression of the E protein inhibitor Id3, and lower the abundance of E47 protein levels (10). Lowering the dose of E47 has been demonstrated to release the block in differentiation and proliferation observed in thymocytes with defects in pre-TCR expression and pre-TCR-mediated signaling (8,9,11). The E proteins also function at the TCR checkpoint, because an E2A deficiency has been shown to accentuate positive selection (12). In contrast, positive selection in Id3-ablated mice is blocked, albeit partially (13). Taken together, these data suggest that the E2A proteins act as gatekeepers at the pre-TCR and TCR checkpoints, and passage through these checkpoints requires pre-TCR or TCR-mediated modulation of E2A activity.E proteins also function as tumor suppressors. E2A-deficient mice rapidly develop thymic lymphoma (5, 14). Reintroduction of E2A activity into cell lines adapted from lymphomas that developed in E2A-ablated mice caused rapid apoptosis (15). In contrast, enforced expression of E47 in conjunction with Bcl-2 induced cell cycle arrest, suggesting a direct role for E2A in the suppression of cell growth (11). As a first approach...