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High-external input agriculture is one of the most disruptive human activities, which have been justified by the current economic paradigm due to high productivity and the need to feed a growing population. However, we are dangerously close to the edge of the planet resources and both hunger and food insecurity has increased. Limiting the use of non-renewable chemical fertilizers and pesticides, changing water management, enhancing diversity and considering the often-neglected social dimension of agriculture are the bases to other chemical and biological technologies to agriculture. Biological inputs can stimulate the substitution of chemical inputs without questioning the current fundaments or can be adopted as a turning point to intensify the harsh processes of transition to more environmental friendly agriculture. The debate is open and our contribution is to develop the scientific basis for biological inputs that, unlike soluble fertilizers and pesticides, depend on a number of factors for its success in promoting crop yield. In this review, we showed the results obtained with the combined use of diazotrophic endophytic bacteria and humic substances in diverse crops (sugarcane, maize, tomato, common beans and pineapple), presenting the main morphological and physiological changes induced by biological technology. A snapshot of the state of the art of the use of plant growth promoting bacteria together with humic substances was provided, showing their potential especially when plants are subjected to moderate to severe abiotic stress. The number of studies reporting the combined use of plant growth promoting bacteria and humic substances is surprisingly low. There is an open avenue for research and encouraging debate is the goal. To overcome the conventional agriculture, maintaining productivity levels is more than scientific challenge, is a humanitarian duty. The biological inputs can help in this purpose.

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Chemical reactions (hydrolysis, oxidation, reduction, methylation, alkyl compounds detachment) were applied to modify the structure of humic substances (HS) isolated from vermicompost. Structural and conformational changes of these humic derivatives were assessed by elemental analyses, size exclusion chromatography (HPSEC), solid-state nuclear magnetic resonance ((13)C CPMAS-NMR), and diffusion ordered spectroscopy (DOSY-NMR), whereas their bioactivity was evaluated by changes in root architecture and proton pump activation of tomato and maize. All humic derivatives exhibited a large bioactivity compared to original HS, both KMnO(4)-oxidized and methylated materials being the most effective. Whereas no general relationship was found between bioactivity and humic molecular sizes, the hydrophobicity index was significantly related with proton pump stimulation. It is suggested that the hydrophobic domain can preserve bioactive molecules such as auxins in the humic matter. In contact with root-exuded organic acids the hydrophobic weak forces could be disrupted, releasing bioactive compounds from humic aggregates. These findings were further supported by the fact that HS and all derivatives used in this study activated the auxin synthetic reporter DR5::GUS.

A series of humic matter samples isolated from a soil sequence, different oxisols, size‐fractionated from a vermicompost humic acid and subjected to chemical modifications, were characterized by CPMAS 13C‐NMR spectroscopy. The relative signal areas in chemical shift regions of NMR spectra of the four sets of samples were analysed by principal component analysis (PCA). Hierarchical cluster analysis (HCA) was applied to build a classification model, which allowed the recognition of humic matter according to its origin. The relationship between carbon species and biological activity of humic acids, as promoters of lateral root emergence, was obtained by applying PLS multivariate analysis. This showed that lateral root emergence was mostly related to NMR parameters such as the hydrophobicity index (HB/HI) and the 40–110 and 160–200 ppm chemical shift regions (hydrophilic carbon HI), while the content of hydrophobic (HB) carbon in humic samples was negatively correlated with induction of lateral root hair. Our results represent a step further in the structure‐bioactivity relationship of natural humic substances and confirm their role as plant root growth promoters.

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