We present an extension of the BM3D filter to volumetric data. The proposed algorithm, BM4D, implements the grouping and collaborative filtering paradigm, where mutually similar d-dimensional patches are stacked together in a (d+1)-dimensional array and jointly filtered in transform domain. While in BM3D the basic data patches are blocks of pixels, in BM4D we utilize cubes of voxels, which are stacked into a 4-D "group." The 4-D transform applied on the group simultaneously exploits the local correlation present among voxels in each cube and the nonlocal correlation between the corresponding voxels of different cubes. Thus, the spectrum of the group is highly sparse, leading to very effective separation of signal and noise through coefficient shrinkage. After inverse transformation, we obtain estimates of each grouped cube, which are then adaptively aggregated at their original locations. We evaluate the algorithm on denoising of volumetric data corrupted by Gaussian and Rician noise, as well as on reconstruction of volumetric phantom data with non-zero phase from noisy and incomplete Fourier-domain (k-space) measurements. Experimental results demonstrate the state-of-the-art denoising performance of BM4D, and its effectiveness when exploited as a regularizer in volumetric data reconstruction.

Abstract-We propose a powerful video filtering algorithm that exploits temporal and spatial redundancy characterizing natural video sequences. The algorithm implements the paradigm of nonlocal grouping and collaborative filtering, where a higherdimensional transform-domain representation of the observations is leveraged to enforce sparsity and thus regularize the data: 3-D spatiotemporal volumes are constructed by tracking blocks along trajectories defined by the motion vectors. Mutually similar volumes are then grouped together by stacking them along an additional fourth dimension, thus producing a 4-D structure, termed group, where different types of data correlation exist along the different dimensions: local correlation along the two dimensions of the blocks, temporal correlation along the motion trajectories, and nonlocal spatial correlation (i.e. self-similarity) along the fourth dimension of the group. Collaborative filtering is then realized by transforming each group through a decorrelating 4-D separable transform and then by shrinkage and inverse transformation. In this way, the collaborative filtering provides estimates for each volume stacked in the group, which are then returned and adaptively aggregated to their original positions in the video. The proposed filtering procedure addresses several video processing applications, such as denoising, deblocking, and enhancement of both grayscale and color data. Experimental results prove the effectiveness of our method in terms of both subjective and objective visual quality, and shows that it outperforms the state of the art in video denoising.

This paper presents the evaluation results of the methods submitted to Challenge US: Biometric Measurements from Fetal Ultrasound Images, a segmentation challenge held at the IEEE International Symposium on Biomedical Imaging 2012. The challenge was set to compare and evaluate current fetal ultrasound image segmentation methods. It consisted of automatically segmenting fetal anatomical structures to measure standard obstetric biometric parameters, from 2D fetal ultrasound images taken on fetuses at different gestational ages (21 weeks, 28 weeks, and 33 weeks) and with varying image quality to reflect data encountered in real clinical environments. Four independent sub-challenges were proposed, according to the objects of interest measured in clinical practice: abdomen, head, femur, and whole fetus. Five teams participated in the head sub-challenge and two teams in the femur sub-challenge, including one team who tackled both. Nobody attempted the abdomen and whole fetus sub-challenges. The challenge goals were two-fold and the participants were asked to submit the segmentation results as well as the measurements derived from the segmented objects. Extensive quantitative (region-based, distance-based, and Bland-Altman measurements) and qualitative evaluation was performed to compare the results from a representative selection of current methods submitted to the challenge. Several experts (three for the head sub-challenge and two for the femur sub-challenge), with different degrees of expertise, manually delineated the objects of interest to define the ground truth used within the evaluation framework. For the head sub-challenge, several groups produced results that could be potentially used in clinical settings, with comparable performance to manual delineations. The femur sub-challenge had inferior performance to the head sub-challenge due to the fact that it is a harder segmentation problem and that the techniques presented relied more on the femur's appearance.

We propose a powerful video denoising algorithm that exploits temporal and spatial redundancy characterizing natural video sequences. The algorithm implements the paradigm of nonlocal grouping and collaborative filtering, where a higher-dimensional transform-domain representation is leveraged to enforce sparsity and thus regularize the data. The proposed algorithm exploits the mutual similarity between 3-D spatiotemporal volumes constructed by tracking blocks along trajectories defined by the motion vectors. Mutually similar volumes are grouped together by stacking them along an additional fourth dimension, thus producing a 4-D structure, termed group, where different types of data correlation exist along the different dimensions: local correlation along the two dimensions of the blocks, temporal correlation along the motion trajectories, and nonlocal spatial correlation (i.e. self-similarity) along the fourth dimension. Collaborative filtering is realized by transforming each group through a decorrelating 4-D separable transform and then by shrinkage and inverse transformation. In this way, collaborative filtering provides estimates for each volume stacked in the group, which are then returned and adaptively aggregated to their original position in the video. Experimental results demonstrate the effectiveness of the proposed procedure which outperforms the state of the art.

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We propose a framework for the denoising of videos jointly corrupted by spatially correlated (i.e., nonwhite) random noise and spatially correlated fixed-pattern noise. Our approach is based on motion-compensated 3D spatiotemporal volumes, i.e., a sequence of 2D square patches extracted along the motion trajectories of the noisy video. First, the spatial and temporal correlations within each volume are leveraged to sparsify the data in 3D spatiotemporal transform domain, and then the coefficients of the 3D volume spectrum are shrunk using an adaptive 3D threshold array. Such array depends on the particular motion trajectory of the volume, the individual power spectral densities of the random and fixed-pattern noise, and also the noise variances which are adaptively estimated in transform domain. Experimental results on both synthetically corrupted data and real infrared videos demonstrate a superior suppression of the random and fixed-pattern noise from both an objective and a subjective point of view.

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