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Transmission ratio distortion (TRD) is the departure from the expected Mendelian ratio in offspring, a poorly investigated biological phenomenon in livestock species. Given the current availability of specific parametric methods for the analysis of segregation data, this study focused on the screening of TRD in 602 402 single nucleotide polymorphisms covering all autosomal chromosomes in seven Spanish beef cattle breeds. On average, 0.13% (n = 786) and 0.01% (n = 29) of genetic markers evidenced sire- or dam-specific TRD respectively. There were no single nucleotide polymorphisms accounting for both sire- and dam-specific TRD at the same time, and only one marker (rs43147474) accounted for (sire-specific) TRD in all seven breeds. It must be noted that rs43147474 is located in the fourth intronic region of the GTP-binding protein 10 gene, and this locus has been previously linked to the maintenance of mitochondria and nucleolar architectures. Alternatively, other candidate genes surround this hot-spot for sire-specific TRD in the cattle genome, and they are related to embryonic and postnatal lethality as well as prostate cancer, among others. This research characterized the distribution of TRD in the bovine genome, highlighting heterogeneous results when comparing across breeds.

The Ripollesa sheep breed is an important Spanish local breed mainly located in the Mediterranean mountains and cultivated plains of Catalonia, exploited under semi-extensive production systems and currently intended for meat production. The morphological characterization of the Ripollesa breed was carried out from the study of eight flocks representative of different subpopulations. A total of 224 Ripollesa ewes and 17 rams were recorded for their live weight and 12 morphological measures, which were used for calculating 12 zootechnical indexes. Differences (P < 0.05) between flocks and sexes were revealed for several measures. A principal component analysis was performed on the morphological measures and revealed two main principal components accounting for 47.6 and 12.3 percent of the inertia, being related to the frame (body size and live weight) and to withers height and ear length, respectively. The cluster analysis allowed differentiating among four subpopulations with relevant implications to be taken into account for the breed conservation programme. The observed differences could be attributable to geographic location, selective history, flock management and genetics. The estimated zootechnical indexes classified the Ripollesa sheep breed as a medium-sized and long-shaped body frame, with a marked orientation to meat production and with signs of adaptation to the environment.

The dietary composition of the semiferal cattle population in the Alberes Natural Park in northeastern Spain was determined four times per year, from June 2002 to February 2004, by microhistological analysis of a total of 120 fecal samples. Woody species, mainly the Quercus and Erica genera, formed the bulk of the diet, reaching 89% of it in winter. However, in spring and summer, the proportion of woody and herbaceous species varied between samples, depending on the habitat where they were collected. The forest samples contained 67% woody species in summer, whereas grassland samples only contained 44%. The results showed that the Alberes cattle population grazed actively in Mediterranean forests and consumed a high proportion of the most combustible species, such as the Erica genus (39% of the epidermal fragments in winter samples). Even when grassland habitat was utilized, in spring and summer, one-third of the diet was from woody species. Some bovines, such as the Alberes cattle breed, can therefore survive year-round in a forest habitat with little forage supplementation, and the consumption of a predominantly woody diet would be expected to reduce forest fire hazards. Resumen En este trabajo se determinó la composición anual de la dieta de una población semi-salvaje que habita el Parque Natural de la Albera (Paratge Natural d'Interè s Nacional de l'Albera) en el NE de Españ a. El estudio se llevó a cabo desde Junio de 2002 hasta Junio de 2004, a partir del análisis del contenido de 120 muestras fecales. Las especies leñ osas, principalmente de los géneros Quercus y Erica constituyeron la mayor parte de la dieta, alcanzando el 89% de la misma en invierno. Sin embargo, en primavera y verano la proporción de especies leñ osas y herbáceas fue diferente según el hábitat donde se recogieron las muestras. Las muestras recogidas en los bosques tuvieron el 67% de especies leñ osas en verano mientras que las recogidas en los pastizales solamente un 44%. Los resultados muestran que la población de ganado Alberes pastorea activamente en los bosques Mediterráneos y consume altas proporciones (39% de los fragmentos epide´rmicos en las muestras de invierno) del ge´nero Erica, cuyas especies son altamente combustibles. Se concluye que algunos bovinos, como la raza Alberes, pueden sobrevivir a lo largo del añ o en ambientes forestales, con escasa suplementación de alimento y que además el hecho de mantener una dieta predominantemente leñ osa podría contribuir a reducir el riesgo de incendio forestal.

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Summary The Alberes population is a native bovine breed of Catalonia with an unclear origin, which historically some authors have assumed as being composed of two different colour varieties (black and fawn). Sixteen microsatellite loci were analysed, all of them included in the AIRE2066 European Concerted Action list. Overall expected and observed heterozygosities reached values of 0.649 and 0.662, respectively. Genetic differences among black and fawn varieties were not significant (FST = 0.007), and therefore the population is a single variety with a great colour gradation. On the contrary, we detected significant genetic differences among herds (FST = 0.026; p < 0.001), showing a genetic heterogeneity over short geographical distances. The number of migrants per generation among pairs of herds oscillates between 1.46 (Roig and Freixe herds) and 5.62 (Castanyers and Roig herds). Moreover, inbreeding and bottleneck situations can be rejected. The Alberes breed has been grouped within the Cantabrian trunk, closely related to the Asturiana de la Montaña and Alistana breeds, although some other breeds may also have influenced the population along its history.

Although heteroskedasticity has been a main topic of interest in beef cattle during recent decades, the current availability of canalization models provided new insights for animal breeding programs. Within this context, birth BW (BWT) was analyzed in the Bruna dels Pirineus beef cattle breed by implementing canalization models that accounted for heterogeneous residual variances due to systematic, permanent environmental effects and additive genetic effects. Analyses were performed on BWT data from 8,130 calves born in 12 commercial breeding herds contributing to the yield recording scheme of the Bruna dels Pirineus breed. Analytical models accounted for direct additive genetic, permanent environmental, and 4 systematic effects (i.e., age of the dam, sex of the calf, birth type, and herd-year-season), and the same effects were evaluated as potential sources of variation in the residual term. Their relevance was checked by the deviance information criterion (DIC), and only residual additive genetic, permanent environmental, birth type, and herd-year-season remained in the operational model, all of them originating relevant reductions in the DIC parameter. Bruna dels Pirineus calves showed a moderate heritability of 0.30 (95% high posterior density, 0.19 to 0.40) for BWT; additional additive genetic variability was revealed in the residual term, this being positively correlated with the direct additive genetic component (0.44; 95% high posterior density, 0.37 to 0.54). Genetic trends were evaluated on both sources of additive genetic variance, and relevant patterns were identified in several herds. Although this breed did not evidence a homogeneous genetic trend for the whole population, herd-specific positive and negative trends were revealed, suggesting the plausibility of genetic selection for canalization on BWT in beef cattle breeds. These results must be viewed as a contribution to the canalization research field, providing relevant information for the breeding scheme of the Bruna dels Pirineus breed, as well as important insights about the genetic background of BWT for the beef industry worldwide.

BackgroundA procedure to measure connectedness among herds was applied to a beef cattle population bred by natural service. It consists of two steps: (a) computing coefficients of determination (CDs) of comparisons among herds; and (b) building sets of connected herds.MethodsThe CDs of comparisons among herds were calculated using a sampling-based method that estimates empirical variances of true and predicted breeding values from a simulated n-sample. Once the CD matrix was estimated, a clustering method that can handle a large number of comparisons was applied to build compact clusters of connected herds of the Bruna dels Pirineus beef cattle. Since in this breed, natural service is predominant and there are almost no links with reference sires, to estimate CDs, an animal model was used taking into consideration all pedigree information and, especially, the connections with dams. A sensitivity analysis was performed to contrast single-trait sire and animal model evaluations with different heritabilities, multiple-trait animal model evaluations with different degrees of genetic correlations and models with maternal effects.ResultsUsing a sire model, the percentage of connected herds was very low even for highly heritable traits whereas with an animal model, most of the herds of the breed were well connected and high CD values were obtained among them, especially for highly heritable traits (the mean of average CD per herd was 0.535 for a simulated heritability of 0.40). For the lowly heritable traits, the average CD increased from 0.310 in the single-trait evaluation to 0.319 and 0.354 in the multi-trait evaluation with moderate and high genetic correlations, respectively. In models with maternal effects, the average CD per herd for the direct effects was similar to that from single-trait evaluations. For the maternal effects, the average CD per herd increased if the maternal effects had a high genetic correlation with the direct effects, but the percentage of connected herds for maternal effects was very low, less than 12%.ConclusionsThe degree of connectedness in a bovine population bred by natural service mating, such as Bruna del Pirineus beef cattle, measured as the CD of comparisons among herds, is high. It is possible to define a pool of animals for which estimated breeding values can be compared after an across-herds genetic evaluation, especially for highly heritable traits.