We evaluated the effects of land use on the distribution of 3 sympatric species of armadillos, Chaetophractus villosus, C. vellerosus, and Dasypus hybridus, on 34 farms in the eastern Pampas. We characterized 4 soil and vegetation variables around each burrow located during surveys of these farms, and related burrow abundance to 10 variables used to characterize each farm. C. vellerosus was the most specialized, using primarily native woodlands and areas with calcareous soil. D. hybridus was associated with natural grasslands and avoided cultivated pastures, and was negatively related to the number of dogs that lived on the farms. C. villosus, the most abundant species, was found in all 4 types of habitats, but its distribution depended on the intensity of hunting on each farm.
Genetic diversity and population structure of two species of South American pinnipeds, Otaria flavescens and Arctocephalus australis, from colonies located along the south-eastern coast of South America, were analysed using mitochondrial DNA haplotypes and compared with two populations of these species from the Pacific coast. A 445 base-pair segment, that included the tRNA-Glu gene (31 bp) and the adjacent cytochrome b gene (414 bp), was amplified using the polymerase chain reaction and sequenced directly. O. flavescens and A. australis showed six and seven haplotypes with 12 and 20 polymorphic sites, respectively. In the Atlantic Ocean there was an individual of A. australis that showed an haplotype that was highly divergent from the others. If this haplotype is excluded, the pattern of haplotype differentiation obtained for both species indicated a possible bottleneck that would have occurred 110,000 years ago, which also affected other pinnipeds. Colonies of the Atlantic and the Pacific did not share haplotypes. This result, based on a limited number of samples for the comparisons between oceans, suggests that populations from both oceans correspond to different evolutionarily significant units. O. flavescens on the Atlantic coast shows two clusters of breeding colonies in Uruguay and Patagonia, separated by a thousand kilometres. Colonies within clusters did not show significant differences in haplotype frequencies, but the difference between the clusters was significant, suggesting that they correspond to different conservation stocks.
Background
Class 1 integrons are one of the most successful elements in the acquisition, expression and spread of antimicrobial resistance genes (ARG) among clinical isolates. Little is known about the gene flow of the components of the genetic platforms of class 1 integrons within and between bacterial communities. Thus it is important to better understand the interactions among “environmental”
intI1
, its genetic platforms and its distribution with human activities.
Methodology/Principal Findings
An evaluation of two types of genetic determinants, ARG (
sul1
and
qacE1
/
qacE
Δ
1
genes) and lateral genetic elements (LGE) (
intI1
, IS
CR1
and
tniC
genes) in a model of a culture-based method without antibiotic selection was conducted in a gradient of anthropogenic disturbances in a Patagonian island recognized as being one of the last regions containing wild areas. The
intI1
, IS
CR1
genes and
intI1
pseudogenes that were found widespread throughout natural communities were not associated with urbanization (p>0.05). Each ARG that is embedded in the most common genetic platform of clinical class 1 integrons, showed different ecological and molecular behaviours in environmental samples. While the
sul1
gene frequency was associated with urbanization, the
qacE1
/
qacE
Δ
1
gene showed an adaptive role to several habitats.
Conclusions/Significance
The high frequency of
intI1
pseudogenes suggests that, although
intI1
has a deleterious impact within several genomes, it can easily be disseminated among natural bacterial communities. The widespread occurrence of IS
CR1
and
intI1
throughout Patagonian sites with different degree of urbanization, and within different taxa, could be one of the causes of the increasing frequency of multidrug-resistant isolates that have characterized Argentina for decades. The flow of ARG and LGE between natural and clinical communities cannot be explained with a single general process but is a direct consequence of the interaction of multiple factors operating at molecular, ecological, phylogenetic and historical levels.
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