Plant roots and soil microorganisms interact with each other mainly in the rhizosphere. Changes in the community structure of the rhizosphere microbiome are influenced by many factors. In this study, we determined the community structure of rhizosphere bacteria in cotton, and studied the variation of rhizosphere bacterial community structure in different soil types and developmental stages using TM-1, an upland cotton cultivar (Gossypium hirsutum L.) and Hai 7124, a sea island cotton cultivar (G. barbadense L.) by high-throughput sequencing technology. Six bacterial phyla were found dominantly in cotton rhizosphere bacterial community including Acidobacteria, Actinobacteria, Bacteroidetes, Planctomycetes, Proteobacteria, and Verrucomicrobia. The abundance of Acidobacteria, Cyanobacteria, Firmicutes, Planctomycetes and Proteobacteria were largely influenced by cotton root. Bacterial α-diversity in rhizosphere was lower than that of bulk soil in nutrient-rich soil, but higher in cotton continuous cropping field soil. The β-diversity in nutrient-rich soil was greater than that in continuous cropping field soil. The community structure of the rhizosphere bacteria varied significantly during different developmental stages. Our results provided insights into the dynamics of cotton rhizosphere bacterial community and would facilitate to improve cotton growth and development through adjusting soil bacterial community structure artificially.
The diversity and function of surface soil bacterial community in farmland shelterbelts of five forest types and one abandoned wilderness area were analyzed by collecting 36 soil samples at depths of 0–10 cm (the upper soil layer) and 10–20 cm (the lower soil layer), extracting DNA from the samples and amplifying and sequencing the bacterial 16S rDNA V3~V4 region. Dominant bacterial phyla in forest soils included the Actinomycetes, Proteobacteria, Acidobacteria, Chlorobacteria, and Bacillus. The number of unique bacterial OTUs (operational taxonomic units) was higher in the upper versus lower soil layer and greater in the abandoned cropland than in the shelterbelts. The number of total bacterial OTUs was highest in the mixed Pinus sylvestris var. mongholica Litv. and Larix gmelinii (Rupr.) Kuzen. forest. At the phyla level, Actinomycetes showed the greatest variation in abundance among forest types, while at the genus level, Actinoplanes varied most among forest types in the upper soil layer and Krasilnikovia varied most in the lower soil layer. Soil bacteria were more strongly correlated and more intense competition in the upper soil layer than in the lower soil layer; Actinoplanes and Krasilnikovia were key genera in bacterial networks. Functional predictions for bacterial community genes indicated that soil fertility potential was strong in the mixed Fraxinus mandshurica Rupr. and Larix gmelinii (Rupr.) Kuzen. forest, weak in the mixed Pinus sylvestris var. mongholica Litv. and Larix gmelinii (Rupr.) Kuzen. forest, and in the Populus×xiaohei forest, and intermediate in the Larix gmelinii (Rupr.) Kuzen. and Pinus sylvestris var. mongholica Litv. forests. This study provides a new theoretical basis for the sustainable management of soil fertility in the agroforestry system.
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