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Northern lakes are important sources of the climate forcing trace gases methane (CH4) and carbon dioxide (CO2). A substantial portion of lakes' annual emissions can take place immediately after ice melt in spring. The drivers of these fluxes are neither well constrained nor fully understood. We present a detailed carbon gas budget for three subarctic lakes, using 6 years of eddy covariance and 9 years of manual flux measurements. We combine measurements of temperature, dissolved oxygen, and CH4 stable isotopologues to quantify functional relationships between carbon gas production and conversion, energy inputs, and the redox regime. Spring emissions were regulated by the availability of oxygen in winter, rather than temperature as during ice‐free conditions. Under‐ice storage increased predictably with ice‐cover duration, and CH4 accumulation rates (25 ± 2 mg CH4‐C·m−2·day−1) exceeded summer emissions (19 ± 1 mg CH4‐C·m−2·day−1). The seasonally ice‐covered lakes emitted 26–59% of the annual CH4 flux and 15–30% of the annual CO2 flux at ice‐off. Reduced spring emissions were associated with winter snowmelt events, which can transport water downstream and oxygenate the water column. Stable isotopes indicate that 64–96% of accumulated CH4 escaped oxidation, implying that a considerable portion of the dissolved gases produced over winter may evade to the atmosphere.

Abstract. Ecosystems exchange climate-relevant trace gases with the atmosphere, including volatile organic compounds (VOCs) that are a small but highly reactive part of the carbon cycle. VOCs have important ecological functions and implications for atmospheric chemistry and climate. We measured the ecosystem-level surface–atmosphere VOC fluxes using the eddy covariance technique at a shallow subarctic lake and an adjacent graminoid-dominated fen in northern Sweden during two contrasting periods: the peak growing season (mid-July) and the senescent period post-growing season (September–October). In July, the fen was a net source of methanol, acetaldehyde, acetone, dimethyl sulfide, isoprene, and monoterpenes. All of these VOCs showed a diel cycle of emission with maxima around noon and isoprene dominated the fluxes (93±22 µmol m−2 d−1, mean ± SE). Isoprene emission was strongly stimulated by temperature and presented a steeper response to temperature (Q10=14.5) than that typically assumed in biogenic emission models, supporting the high temperature sensitivity of arctic vegetation. In September, net emissions of methanol and isoprene were drastically reduced, while acetaldehyde and acetone were deposited to the fen, with rates of up to -6.7±2.8 µmol m−2 d−1 for acetaldehyde. Remarkably, the lake was a sink for acetaldehyde and acetone during both periods, with average fluxes up to -19±1.3 µmol m−2 d−1 of acetone in July and up to -8.5±2.3 µmol m−2 d−1 of acetaldehyde in September. The deposition of both carbonyl compounds correlated with their atmospheric mixing ratios, with deposition velocities of -0.23±0.01 and -0.68±0.03 cm s−1 for acetone and acetaldehyde, respectively. Even though these VOC fluxes represented less than 0.5 % and less than 5 % of the CO2 and CH4 net carbon ecosystem exchange, respectively, VOCs alter the oxidation capacity of the atmosphere. Thus, understanding the response of their emissions to climate change is important for accurate prediction of the future climatic conditions in this rapidly warming area of the planet.

Abstract. The Arctic Ocean, especially the East Siberian Arctic Shelf (ESAS), has been proposed as a significant source of methane that might play an increasingly important role in the future. However, the underlying processes of formation, removal and transport associated with such emissions are to date strongly debated. CH4 concentration and triple isotope composition were analyzed on gas extracted from sediment and water sampled at numerous locations on the shallow ESAS from 2007 to 2013. We find high concentrations (up to 500 µM) of CH4 in the pore water of the partially thawed subsea permafrost of this region. For all sediment cores, both hydrogen and carbon isotope data reveal the predominant occurrence of CH4 that is not of thermogenic origin as it has long been thought, but resultant from microbial CH4 formation. At some locations, meltwater from buried meteoric ice and/or old organic matter preserved in the subsea permafrost were used as substrates. Radiocarbon data demonstrate that the CH4 present in the ESAS sediment is of Pleistocene age or older, but a small contribution of highly 14C-enriched CH4, from unknown origin, prohibits precise age determination for one sediment core and in the water column. Our sediment data suggest that at locations where bubble plumes have been observed, CH4 can escape anaerobic oxidation in the surface sediment.

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