The CCR5 chemokine receptor acts as a co-receptor for HIV-1 viral entry. Here we report the 2.7 Å resolution crystal structure of human CCR5 bound to the marketed HIV drug Maraviroc. The structure reveals a ligand binding site that is distinct from the proposed major recognition sites for chemokines and the viral glycoprotein gp120, providing insights into the mechanism of allosteric inhibition of chemokine signaling and viral entry. A comparison between CCR5 and CXCR4 crystal structures, along with models of co-receptor/gp120-V3 complexes, suggests that different charge distributions and steric hindrances caused by residue substitutions may be major determinants of HIV-1 co-receptor selectivity. These high-resolution insights into CCR5 can enable structure-based drug discovery for the treatment of HIV-1 infection.
Background Laodelphax striatellus Fallén (Hemiptera: Delphacidae) is one of the most destructive rice pests. L. striatellus is different from 2 other rice planthoppers with a released genome sequence, Sogatella furcifera and Nilaparvata lugens, in many biological characteristics, such as host range, dispersal capacity, and vectoring plant viruses. Deciphering the genome of L. striatellus will further the understanding of the genetic basis of the biological differences among the 3 rice planthoppers.FindingsA total of 190 Gb of Illumina data and 32.4 Gb of Pacbio data were generated and used to assemble a high-quality L. striatellus genome sequence, which is 541 Mb in length and has a contig N50 of 118 Kb and a scaffold N50 of 1.08 Mb. Annotated repetitive elements account for 25.7% of the genome. A total of 17 736 protein-coding genes were annotated, capturing 97.6% and 98% of the BUSCO eukaryote and arthropoda genes, respectively. Compared with N. lugens and S. furcifera, L. striatellus has the smallest genome and the lowest gene number. Gene family expansion and transcriptomic analyses provided hints to the genomic basis of the differences in important traits such as host range, migratory habit, and plant virus transmission between L. striatellus and the other 2 planthoppers.ConclusionsWe report a high-quality genome assembly of L. striatellus, which is an important genomic resource not only for the study of the biology of L. striatellus and its interactions with plant hosts and plant viruses, but also for comparison with other planthoppers.
The rare earth Er 31 and Yb 31 codoped system is the most attractive for showcasing energy transfer upconversion. This system can generate green and red emissions from Er 31 under infrared excitation of the sensitizer Yb 31 . It is well known that the red-emitting state can be populated from the upper green-emitting state. The contribution of multiphonon relaxation to this population is generally considered important at low excitation densities. Here, we demonstrate for the first time the importance of a previously proposed but neglected mechanism described as a cross relaxation energy transfer from Er 31 to Yb 31 , followed by an energy back transfer within the same Er 31 -Yb 31 pair. A luminescence spectroscopy study of cubic Y 2 O 3 :Er 31 , Yb 31 indicates that this mechanism can be more efficient than multiphonon relaxation, and it can even make a major contribution to the red upconversion. The study also revealed that the energy transfers involved in this mechanism take place only in the nearest Er 31 -Yb 31 pairs, and thus, it is fast and efficient at low excitation densities. Our results enable a better understanding of upconversion processes and properties in the Er 31 -Yb 31 system. Light: Science & Applications (2015) 4, e239; doi:10.1038/lsa.2015.12; published online 16 January 2015 Keywords: energy transfer; erbium-ytterbium system; upconversion luminescence INTRODUCTION Infrared to visible upconversion luminescence has been extensively studied for its fundamental value 1-3 and its various potential applications in upconversion lasers, 4 bioimaging, 5 etc. The codoping of Er 31 and a high concentration of sensitizer Yb 31 forms the most attractive energy transfer upconversion (ETU) system. Under infrared (980 nm) excitation of the sensitizer Yb 31 , this system can generate green and red upconversions originating from the 4 S 3/2 R 4 I 15/2 and 4 F 9/2 R 4 I 15/2 transitions of Er 31 , respectively. Unlike the green upconversion, the red upconversion benefits from several possible excitation mechanisms. 6,7 Multiphonon relaxation (MPR) from the upper 4 S 3/2 state and ETU from the lower intermediate 4 I 13/2 state are generally considered dominant at low infrared excitation densities because other mechanisms involving three photon processes 6,7 become important only at high infrared excitation densities, 8 which is not the topic of this work.The MPR is not the only mechanism for populating the 4 F 9/2 from the 4 S 3/2 ; a non-MPR mechanism was proposed earlier, 8 but it has not been considered important since then. This mechanism involves two sequential energy transfers between Er 31 and Yb 31 . The first step is a well-known cross-relaxation (CR) energy transfer from Er 31 in the
Chemical functionalization is a promising approach to controllably manipulate the characteristics of graphene. Here, we designed cis-dienes, featuring two dihydronaphthalene backbones, to decorate a graphene surface via Diels-Alder (DA) click reaction. The installation of a diene moiety into a nonplanar molecular structure to form cis-conformation enables a rapid (∼5 min) DA reaction between graphene and diene groups. Patterned graphene of sub-micrometer resolution can be obtained by easily soaking poly(methyl methacrylate)-masked graphene in solution of hydroxyl-substituted cis-diene at room temperature. The functionalization degree can be further controlled by carrying out the reaction at higher temperature. The present result gives important insight into the effect of molecular conformation on the graphene functionalization process, and provides an effective and facile method for graphene functionalization.
Attack from insect herbivores poses a major threat to plant survival, and accordingly, plants have evolved sophisticated defence systems. Maize is cultivated as a staple crop worldwide, and insect feeding causes large production losses. Despite its importance in agriculture, little is known about how maize reacts to insect herbivory. Taking advantage of advances in sequencing and mass spectrometry technology, we studied the response of maize to mechanical wounding and simulated Mythimna separata (a specialist insect) herbivory by applying its oral secretions (OS) to wounds. In comparison to the responses induced by mechanical wounding, OS elicited larger and longer-lasting changes in the maize transcriptome, proteome, metabolome and phytohormones. Specifically, many genes, proteins and metabolites were uniquely induced or repressed by OS. Nearly 290 transcription factor genes from 39 families were involved in OS-induced responses, and among these, more transcription factor genes were specifically regulated by OS than by wounding. This study provides a large-scale omics dataset for understanding maize response to chewing insects and highlights the essential role of OS in plant-insect interactions.
An aptamer-based security system mimicking keypad lock function was successfully designed. The system was turned "ON" with a strong fluorescent output signal only when the inputs were added according to the correct combination and exact sequence. Otherwise, the system was kept "OFF" to prevent illegal access.
Maize ( Zea mays ) is a staple cereal crop cultivated all over the world but that is threatened by various insects. Feeding of the lepidopteran insect Mythimna separata triggers defence signalling and increases anti-herbivore benzoxazinoids (Bxs) in the insect-damaged maize leaves. However, the herbivory-elicited within-leaf and leaf-to-leaf systemic signalling in maize remains largely unexplored. Here, we show that simulated M. separata herbivory and mechanical wounding elicited increased levels of jasmonic acid (JA), JA–Ile (JA–isoleucine conjugate) and Bxs in the damaged areas and in specific systemic regions within a leaf. Importantly, increased contents of Bxs were detected in a systemic leaf, and consistently, this leaf exhibited increased defence against M. separata . Increased JA/JA–Ile and altered transcriptome, including Bx biosynthesis genes, were detected in systemic leaves after wounding or simulated herbivory treatments, although only simulated herbivory induced increase of the contents of Bxs systemically. Promoter and co-expression analysis revealed that transcription factors bHLH57 and WRKY34 may regulate Bx biosynthesis genes in systemic leaves. Moreover, leaf ablation experiment indicated that the systemic signal rapidly exited the local leaves within 30 min after elicitation. This study provides new insight into the temporal and spatial regulation of defence responses of maize against lepidopteran insects. This article is part of the theme issue ‘Biotic signalling sheds light on smart pest management’.
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