The taxonomy of the genus Colletotrichum has undergone various changes. These alterations arise from the use of modern molecular tools. Currently, Colletotrichum species are grouped into complexes. Species of Colletotrichum associated with diseases in lima bean have been investigated very little. In Brazil, anthracnose in lima bean has often been associated with Colletotrichum truncatum, but only morphological characteristics have been used for identification purposes. In this study, samples of lima bean with symptoms of spots on the leaves and pods have been collected in Piauí and Alagoas states. Comparisons of morphological characteristics revealed nine isolates with cylindrical or curved conidia. The ITS region and partial sequences of GAPDH, β-tubulin and Actin regions were amplified by PCR, sequenced and submitted to multilocus phylogenetic analysis. The isolates analyzed grouped with reference specimens from Colletotrichum truncatum, C. cliviae and C. fructicola. All isolates were pathogenic to 25-day-old lima bean seedlings. Therefore, this work confirms the pathogenicity of C. truncatum to lima bean and for the first time records the occurrence of C. cliviae and C. fructicola as pathogens of this host in Brazil.
The genus Begomovirus (family Geminirvidae) comprises circular single-stranded DNA viruses that infect both cultivated and non-cultivated hosts, being transmitted by the insect vector Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae). This study aimed to conduct the molecular characterization of a novel begomovirus infecting the non-cultivated plant Gaya guerkeana K. Schum. (Malvaceae). A leaf sample of G. guerkeana was collected in the State of Pernambuco, Brazil, in 2010. Viral genomic components were amplified via RCA, cloned, and commercially sequenced. The full-length DNA-A sequence was used for phylogenetic analysis and pairwise comparisons with other previously reported begomoviruses. The begomovirus DNA-A from G. guerkeana was most closely related to the Sida mottle Alagoas virus (SiMoAV, JX871386), having 84.8% nucleotide identity. Using the ≥ 91% identity criteria for DNA-A established by the Geminivirus Study Group of the International Committee on Taxonomy of Viruses, this isolate was considered a putative new begomovirus species, and the name Gaya yellow mosaic virus (GaYMV) is suggested. The GaYMV isolate grouped with SiMoAV and other begomoviruses infecting Sida spp. from the State of Alagoas, Brazil. This is the first report of a begomovirus infecting G. guerkeana, indicating that this non-cultivated plant can act as a reservoir/source of begomoviruses.
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