Weeds are notorious plant species exhibiting a harmful impact on crops. Biological weed control is an efficient and environmentally friendly technique, usually constitutes naturally derived compounds, including bioherbicidal metabolites produced by Streptomyces sp. The isolation and structural identification of phytotoxic compounds from Streptomyces have recently been proposed as an effective way to the discovery of novel bioherbicides. In the screening of bioherbicidal agents, isolated Streptomyces strain KRA17-580 demonstrated significant phytotoxic activity against Digitaria ciliaris. Phylogenetic analysis of the 16S rRNA sequence indicated that isolated KRA17-580 is similar to Streptomyces olivochromogenes. The bacterial culture conditions were optimized for temperature, agitation, and initial pH. Streptomyces strain KRA17-580 showed intense phytotoxic activity and high cell mass at an initial pH of 5.5–7.0, more than 150 rpm, and 25–30 °C. The herbicidal compounds isolated from the culture filtrate of strain KRA17-580 were purified by solvent partition, C18, Sephadex LH20 column chromatography, and high-performance liquid chromatography. By 1D-NMR, 2D-NMR, and electrospray ionization mass spectrometry analysis, the 580-H1 and 580-H2 compounds were identified as a cinnoline-4-carboxamide (M W, 173.0490; C9H7N3O2) and cinnoline-4-carboxylic acid (M W, 174.0503; C9H6N2O2), respectively. Only these two herbicidal compounds showed strong phytotoxic activity against D. ciliaris in foliar applications. However, compound 580-H2 was more phytotoxic than 580-H1 and the toxicity was dose-dependent. The herbicidal metabolite KRA17-580 produced by Streptomyces sp. is a new bioherbicidal candidate that may provide a new lead molecule for more efficient phytotoxic compounds.
With increasing environmental issues from synthetic chemical herbicides, microbe-originated herbicides could be a fascinating alternative in current agriculture. We isolated Streptomyces strains that produced herbicidal active metabolite(s) against a grass weed Digitaria sanguinalis. According to the result from 16S rDNA sequence comparison with the close strains, the best isolate (Code name MS-80673) was identified as Streptomyces scopuliridis KR-001. The closest type strain was Streptomyces scopuliridis RB72 which was previously reported as a bacteriocin producer. The optimal culture condition of S. scopuliridis KR-001 was 28 o C, pH 7.0 and culture period 4 to7 days. Both of soil and foliar application of the crude culture broth concentrate was effective on several troublesome or noxious weed species such as a Sciyos angulatus in a greenhouse and field condition. Phytotoxic symptoms of the culture broth concentrate of S. scopuliridis KR-001 by foliar application were wilting and burndown of leaves, and stems followed by discoloration and finally plant death. In crops such as rice, wheat, barley, hot pepper and tomato, growth inhibition was observed. These results suggest that the new S. scopuliridis KR-001 strain producing herbicidal metabolites may be a new bio-herbicide candidate and/or may provide a new lead molecule for a more efficient herbicide.
BackgroundDespite increasing importance of Acinetobacter baumannii in nosocomial infections and rapid development of multi-antimicrobial resistance in this strain, the resistance mechanisms of β-lactam antimicrobials in A. baumannii were not clearly defined. In order to observe the resistance mechanisms against β-lactams and carbapenem, we characterized the production of β-lactamases and outermembrane protein (OMP) profiles for the 44 clinical isolates of A. baumannii.MethodsThe MICs of antimicrobials were determined by agar dilution test. The secondary β-lactamases were characterized by isoelectric focusing, polymerase chain reactions and nucleotide sequencing, and the production of chromosomal β-lactamases was quantitated by spectrophotometric method. For two strains with an elevated MIC of carbapenem, outermembrane protein (OMP) profile was analyzed by ultracentrifugation of the sonicated bacteral cells and SDS-PAGE.Results and conclusionTwenty two or 4 of 44 strains produced TEM-1-like β-lactamase or PER-1 extended-spectrum β-lactamase, respectively. However, when we analyzed the MICs of several β-lactams with the β-lactamase production, the resistance level of β-lactam was mainly determined by the production of chromosomal β-lactamase, not by the secondary β-lactamases in the clinical isolates of A. baumannii. In two strains with an elevated MIC of imipenem, a decrease or loss of about 35 kDa and 22 kDa proteins in OMP was observed, which suggested that the change of OMP played a role in carbapenem resistance.
Remote sensing techniques offer significant potential for generating accurate thick oil slick maps critical for marine oil spill response. However, field validation and methodology assessment challenges remain. Here, we report on an approach to leveraging oil emissions from the Coal Oil Point (COP) natural marine hydrocarbon seepage offshore of southern California, where prolific oil seepage produces thick oil slicks stretching many kilometers. Specifically, we demonstrate and validate a remote sensing approach as part of the Seep Assessment Study (SAS). Thick oil is sufficient for effective mitigation strategies and is set at 0.15 mm. The brightness temperature of thick oil, TBO, is warmer than oil-free seawater, TBW, allowing segregation of oil from seawater. High spatial-resolution airborne thermal and visible slick imagery were acquired as part of the SAS; including along-slick “streamer” surveys and cross-slick calibration surveys. Several cross-slick survey-imaged short oil slick segments that were collected by a customized harbor oil skimmer; termed “collects”. The brightness temperature contrast, ΔTB (TBO−TBW), for oil pixels (based on a semi-supervised classification of oil pixels) and oil thickness, h, from collected oil for each collect provided the empirical calibration of ΔTB(h). The TB probability distributions provided TBO and TBW, whereas a spatial model of TBW provided ΔTB for the streamer analysis. Complicating TBW was the fact that streamers were located at current shears where two water masses intersect, leading to a TB discontinuity at the slick. This current shear arose from a persistent eddy down current of the COP that provides critical steering of oil slicks from the Coal Oil Point. The total floating thick oil in a streamer observed on 23 May and a streamer observed on 25 May 2016 was estimated at 311 (2.3 bbl) and 2671 kg (20 bbl) with mean linear floating oil 0.14 and 2.4 kg m−1 with uncertainties by Monte Carlo simulations of 25% and 7%, respectively. Based on typical currents, the average of these two streamers corresponds to 265 g s−1 (~200 bbl day−1) in a range of 60–340 bbl day−1, with significant short-term temporal variability that suggests slug flow for the seep oil emissions. Given that there are typically four or five streamers, these data are consistent with field emissions that are higher than the literature estimates.
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