BackgroundDurum wheat (Triticum durum Desf.) is a tetraploid cereal grown in the medium to low-precipitation areas of the Mediterranean Basin, North America and South-West Asia. Genomics applications in durum wheat have the potential to boost exploitation of genetic resources and to advance understanding of the genetics of important complex traits (e.g. resilience to environmental and biotic stresses). A dense and accurate consensus map specific for T. durum will greatly facilitate genetic mapping, functional genomics and marker-assisted improvement.ResultsHigh quality genotypic data from six core recombinant inbred line populations were used to obtain a consensus framework map of 598 simple sequence repeats (SSR) and Diversity Array Technology® (DArT) anchor markers (common across populations). Interpolation of unique markers from 14 maps allowed us to position a total of 2,575 markers in a consensus map of 2,463 cM. The T. durum A and B genomes were covered in their near totality based on the reference SSR hexaploid wheat map. The consensus locus order compared to those of the single component maps showed good correspondence, (average Spearman’s rank correlation rho ρ value of 0.96). Differences in marker order and local recombination rate were observed between the durum and hexaploid wheat consensus maps. The consensus map was used to carry out a whole-genome search for genetic differentiation signatures and association to heading date in a panel of 183 accessions adapted to the Mediterranean areas. Linkage disequilibrium was found to decay below the r2 threshold = 0.3 within 2.20 cM, on average. Strong molecular differentiations among sub-populations were mapped to 87 chromosome regions. A genome-wide association scan for heading date from 27 field trials in the Mediterranean Basin and in Mexico yielded 50 chromosome regions with evidences of association in multiple environments.ConclusionsThe consensus map presented here was used as a reference for genetic diversity and mapping analyses in T. durum, providing nearly complete genome coverage and even marker density. Markers previously mapped in hexaploid wheat constitute a strong link between the two species. The consensus map provides the basis for high-density single nucleotide polymorphic (SNP) marker implementation in durum wheat.Electronic supplementary materialThe online version of this article (doi:10.1186/1471-2164-15-873) contains supplementary material, which is available to authorized users.

Simultaneous improvement of protein content and grain yield by index selection is possible but its efficiency largely depends on the weighting of the single traits. The genetic architecture of these indices is similar to that of the primary traits. Grain yield and protein content are of major importance in durum wheat breeding, but their negative correlation has hampered their simultaneous improvement. To account for this in wheat breeding, the grain protein deviation (GPD) and the protein yield were proposed as targets for selection. The aim of this work was to investigate the potential of different indices to simultaneously improve grain yield and protein content in durum wheat and to evaluate their genetic architecture towards genomics-assisted breeding. To this end, we investigated two different durum wheat panels comprising 159 and 189 genotypes, which were tested in multiple field locations across Europe and genotyped by a genotyping-by-sequencing approach. The phenotypic analyses revealed significant genetic variances for all traits and heritabilities of the phenotypic indices that were in a similar range as those of grain yield and protein content. The GPD showed a high and positive correlation with protein content, whereas protein yield was highly and positively correlated with grain yield. Thus, selecting for a high GPD would mainly increase the protein content whereas a selection based on protein yield would mainly improve grain yield, but a combination of both indices allows to balance this selection. The genome-wide association mapping revealed a complex genetic architecture for all traits with most QTL having small effects and being detected only in one germplasm set, thus limiting the potential of marker-assisted selection for trait improvement. By contrast, genome-wide prediction appeared promising but its performance strongly depends on the relatedness between training and prediction sets.

International audienceWith standardised near isogenic line (NIL) differentials co-operators were able to present the first comprehensive virulence survey of the European wheat leaf rust population (1996-1999). The work included pathotype identification of 2608 isolates and field tests of NILs. Lr9 and Lr19 were very effective all over Europe. Lr24, Lr25, and Lr28 were also effective, but in some countries and locations substantial virulence frequencies were observed. In addition, the genes Lr12, Lr13, Lr22a, Lr34, Lr35 and Lr37 were effective at the adult plant stage, but locally less so. In general, the indoor seedling tests and adult plant field tests showed good agreement. Virulence to Lr1, Lr2a, Lr24, Lr25, Lr28 and Lr29 tended to increase in the period, for the other Lr-genes the virulence frequency remained more or less stable. Among the 105 pathotypes identified none was clearly predominant in Europe.La situation en Europe pour la virulence de la rouille brune chez le blé. L'utilisation d'une gamme d'hôtes différentiels commune composée de lignées isogéniques (NIL) a permis aux auteurs de réaliser le premier inventaire exhaustif de la population européenne de rouille brune du blé (1996-1999). Deux mille six cent huit isolats ont été identifiés et les NIL ont été évaluées au champ. Lr9 et Lr19 se sont révélés efficaces dans toute l'Europe. Lr24, Lr25 et Lr28 ont également été efficaces, mais la fréquence des virulences correspondantes était non négligeable dans certains pays et certains lieux. Les gènes Lr12, Lr13, Lr22a, Lr34, Lr35 et Lr37 ont été efficaces au stade adulte, excepté dans quelques lieux. En général, les résultats des tests au stade plantule en conditions contrôlées ont été cohérents avec ceux obtenus au stade adulte au champ. Les fréquences de virulence sont demeurées stables au cours de la période étudiée, sauf pour Lr1, Lr2a, Lr24, Lr25 et Lr29, dont les fréquences de virulence correspondantes tendaient à augmenter. Aucun des 105 pathotypes identifiés n'est apparu clairement dominant en Europe

Key messageWe detected several, most likely novel QTL for adult plant resistance to rusts. Notably three QTL improved resistance to leaf rust and stripe rust simultaneously indicating broad spectrum resistance QTL.AbstractThe rusts of wheat (Puccinia spp.) are destructive fungal wheat diseases. The deployment of resistant cultivars plays a central role in integrated rust disease management. Durability of resistance would be preferred, but is difficult to analyse. The Austrian winter wheat cultivar Capo was released in the 1989 and grown on a large acreage during more than two decades and maintained a good level of quantitative leaf rust and stripe rust resistance. Two bi-parental mapping populations: Capo × Arina and Capo × Furore were tested in multiple environments for severity of leaf rust and stripe rust at the adult plant stage in replicated field experiments. Quantitative trait loci associated with leaf rust and stripe rust severity were mapped using DArT and SSR markers. Five QTL were detected in multiple environments associated with resistance to leaf rust designated as QLr.ifa-2AL, QLr.ifa-2BL, QLr.ifa-2BS, QLr.ifa-3BS, and QLr.ifa-5BL, and five for resistance to stripe rust QYr.ifa-2AL, QYr.ifa-2BL, QYr.ifa-3AS, QYr.ifa-3BS, and QYr.ifa-5A. For all QTL apart from two (QYr.ifa-3AS, QLr.ifa-5BL) Capo contributed the resistance improving allele. The leaf rust and stripe rust resistance QTL on 2AL, 2BL and 3BS mapped to the same chromosome positions, indicating either closely linked genes or pleiotropic gene action. These three multiple disease resistance QTL (QLr.ifa-2AL/QYr.ifa-2AL, QLr.ifa.2BL/QYr.ifa-2BL, QLr.ifa-3BS/QYr.ifa.3BS) potentially contribute novel resistance sources for stripe rust and leaf rust. The long-lasting resistance of Capo apparently rests upon a combination of several genes. The described germplasm, QTL and markers are applicable for simultaneous resistance improvement against leaf rust and stripe rust.Electronic supplementary materialThe online version of this article (doi:10.1007/s00122-014-2357-0) contains supplementary material, which is available to authorized users.

-Seventy two wheat cultivars and breeding lines were tested for at least two years in up to ten European countries for resistance against leaf rust under field conditions. In addition, seedling resistance was determined with local races and with defined isolates to postulate resistance genes. Nine entries (Batis, Capo, RE9001, RE9801, Terza, Toronit, Titlis, Barra, Beaufort) were highly resistant at all locations, and were regarded as excellent sources of resistance for breeding programs. Two thirds of the 72 entries possess adult plant and/or partial resistance. Cultivars with the gene Lr13 differed greatly in disease response showing that Lr13 alone does not provide adequate resistance in Europe. Gene Lr37 provided generally good adult plant resistance but seedlings with this gene were moderately susceptible. Many of the wheat cultivars/lines investigated possess unidentified adult plant resistance gene(s). Seedling resistance was attributable mostly to the genes Lr1, Lr3a, Lr3ka, Lr10, Lr14a, Lr17b, Lr20 or Lr26. Triticum aestivum / Puccinia recondita / wheat / leaf rust / resistance Résumé -Résistance du germplasme de blé d'hiver européen à la rouille des feuilles. Pendant au moins deux ans, 72 cultivars et lignées de sélection avancées de blé ont été testées aux champs dans dix pays européens pour évaluer la résistance à la rouille des feuilles. De plus, la résistance a été évaluée lors d'essais en laboratoire sur des plantules infec-

In recent years needs have increased to investigate the necessity of breeding cereals for organic agriculture. The aims of this study were (1) to compare 37 bread wheat (Triticum aestivum L.) varieties with different breeding origin under low input conventional and certified organic farming conditions in Austria and Hungary for 3 years, (2) to identify traits highly sensitive to management systems that could be separated according to their suggested selecting environments and (3) to find evidence for the distinctness of organic wheat breeding. According to the results, seven out of the 15 traits assessed during this study showed significant management 9 genotype interaction meaning that these traits could be the basis of selection for different management systems.Heading date, sensitivity to leaf rust and powdery mildew had high repeatabilities. For economic reasons, it is therefore reasonable to select for these traits in conventional fields even if the selection target is organic agriculture. However, the present study suggests that selection for the other four traits (grain yield, test weight, leaf-inclination and vigorous growth during booting) should be done later in the target environment. The study compared groups of varieties developed by different breeding strategies (organic, conventional and combined strategies). The results of multivariate analyses showed that the organic breeding was distinct from the other two breeding strategies, but the combined and conventional breeding resulted in similar groupings. It is concluded that the selecting environment has measurable effects on the performance of bread wheat varieties under organic and low input growing conditions.

In Central Europe, drought is the most important limiting factor for autumnsown cereals. Due to the decline in groundwater, it is a priority to use less waterdemanding forms of crop production. Water use efficiency (WUE) can only be increased if cultivars with satisfactory water management traits are grown, so that they can exploit the water reserves of the soil even if drought occurs during the vegetation. Water consumption and water use efficiency of winter wheat genotypes were investigated in a model experiment carried out in a climate-controlled glasshouse. The plants were grown either with optimum water supplies or with simulated drought in three phenophases, and measurements were made on the yield parameters, phenological traits and water use parameters of the plants. Substantial differences were observed between the water demands of the cultivars, and it was found that the later the phenophase in which drought was simulated, the greater the decline in water uptake. The analysis of WUE led to the conclusion that the WUE values of cultivars with short vegetation periods dropped to the greatest extent when water deficit was suffered at first node appearance, while cultivars with longer vegetation periods were more sensitive to drought during the heading and grain-filling stages.

The determination of the gluten index is a widely used method for analysing the gluten strength of bread wheat and spring durum wheat genotypes. The present work was carried out to study the effect of the genotype, meteorological factors (temperature, precipitation and number of days with T max C 30°C) and agronomic treatments (N fertilisation and plant protection) on the gluten index of winter durum wheat varieties and breeding lines. The results indicated that the gluten index had little dependence on the environment, being determined to the greatest extent by the genotype. Compared with varieties having weak gluten, those with a strong gluten matrix responded less sensitively to changes in environmental conditions. Among the meteorological factors, high temperature at the end of the grain-filling period caused the greatest reduction in the mean gluten index of three varieties (R 2 = 0.462), while the fertiliser was found to be a significant factor affecting the gluten strength of winter durum wheat varieties. Using selection based on the gluten index, the gluten strength of winter durum wheat lines can be improved sufficiently to make them competitive with high quality spring varieties.