ProblemDue to the generally low biomass of organisms in the deep sea, the relative inaccessibility of deep-sea environments, and the lack of economically valued species, disease agents and the ecological impact of diseases in deep-sea ecosystems are more poorly studied than they are in coastal systems. Even at deep-sea hydrothermal vents and cold seeps, where dense communities of metazoan organisms have been the focus of a large number of research expeditions in recent years, pathogens are rarely considered as causes of mortality or important factors in determining community structure, although there are recent exceptions (Powell et al. 1999;Terlizzi et al. 2004;Ward et al. 2004;Mills et al. 2005). In shallowwater ecosystems, climate variability and human activities (including transport of pathogens and habitat degradation) have been implicated in disease outbreaks (Harvell et al. 1999;Lafferty et al. 2004). There is little reason to suspect that these factors are operating in deep-sea systems at present, although inoculation of naïve populations with submersible-transmitted pathogens is not impossible. We report the discovery of a large number of diseased mussels at a deep-sea hydrothermal vent in Fiji Basin and we present the histological, ultrastructural, and molecular phylogenetic characterization of a fungus associated with tissue pathology and a strong molluscan immune response. AbstractMass mortalities due to disease are important determinants of population and community structure in marine ecosystems, but the speed at which an epizootic may sweep through a population, combined with rapid selection for diseaseresistant stocks, can mask the ecological impact of disease in all but the most closely monitored populations. We document an emergent epizootic event in the deep sea that is occurring in mussels (Bathymodiolus brevior) at the Mussel Hill hydrothermal vent in Fiji Basin and we identify the causal agent as a black yeast (order Chaetothyriales) that elicits a pronounced host immune response and is associated with tissue deterioration. The yeast was not observed in other invertebrate taxa (the gastropods Ifremeria nautilei, Alviniconcha aff. hessleri; the limpets Lepetodrilus schrolli, Symmetromphalus aff. hageni; the polychaetes Branchipolynoe pettiboneae, Amphisamytha cf. galapagensis) associated with the mussel bed, nor in mussels (Bathymodiolus brevior) collected from adjacent Lau Basin mussel beds. Massive mussel mortality resulting from the fungal infection is anticipated at the Mussel Hill site in Fiji Basin; we expect that epizootic outbreaks in dense invertebrate communities have the potential to be major determinants of community structure in deep-sea chemosynthetic ecosystems. The possibility that submersible assets may serve as vectors for transport of the fungus warrants further attention.

Understanding how rising temperatures, ocean acidification, and hypoxia affect the performance of coastal fishes is essential to predicting species-specific responses to climate change. Although a population’s habitat influences physiological performance, little work has explicitly examined the multi-stressor responses of species from habitats differing in natural variability. Here, clearnose skate (Rostaraja eglanteria) and summer flounder (Paralichthys dentatus) from mid-Atlantic estuaries, and thorny skate (Amblyraja radiata) from the Gulf of Maine, were acutely exposed to current and projected temperatures (20, 24, or 28 °C; 22 or 30 °C; and 9, 13, or 15 °C, respectively) and acidification conditions (pH 7.8 or 7.4). We tested metabolic rates and hypoxia tolerance using intermittent-flow respirometry. All three species exhibited increases in standard metabolic rate under an 8 °C temperature increase (Q10 of 1.71, 1.07, and 2.56, respectively), although this was most pronounced in the thorny skate. At the lowest test temperature and under the low pH treatment, all three species exhibited significant increases in standard metabolic rate (44–105%; p < 0.05) and decreases in hypoxia tolerance (60–84% increases in critical oxygen pressure; p < 0.05). This study demonstrates the interactive effects of increasing temperature and changing ocean carbonate chemistry are species-specific, the implications of which should be considered within the context of habitat.

Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and share similar risk to anthropogenic threats that vary on a vertical gradient. We highlight the critical next steps toward incorporating vertical movement into global management and monitoring strategies for elasmobranchs, emphasizing the need to address geographic and taxonomic biases in deployments and to concurrently consider both horizontal and vertical movements.

Accurately characterizing the biology of a pelagic shark species is critical when assessing its status and resilience to fishing pressure. Natural mortality (M) is well known to be a key parameter determining productivity and resilience, but also one for which estimates are most uncertain. While M can be inferred from life history, validated direct estimates are extremely rare for sharks. Porbeagle (Lamna nasus) and shortfin mako (Isurus oxyrinchus) are presently overfished in the North Atlantic, but there are no directed fisheries and successful live release of bycatch is believed to have increased. Understanding M, post-release mortality (PRM), and variables that affect mortality are necessary for management and effective bycatch mitigation. From 177 deployments of archival satellite tags, we inferred mortality events, characterized physiological recovery periods following release, and applied survival mixture models to assess M and PRM. We also evaluated covariate effects on the duration of any recovery period and PRM to inform mitigation. Although large sample sizes involving extended monitoring periods (&gt;90 days) would be optimal to directly estimate M from survival data, it was possible to constrain estimates and infer probable values for both species. Furthermore, the consistency of M estimates with values derived from longevity information suggests that age determination is relatively accurate for these species. Regarding bycatch mitigation, our analyses suggest that juvenile porbeagle are more susceptible to harm during capture and handling, that keeping lamnid sharks in the water during release is optimal, and that circle hooks are associated with longer recovery periods for shortfin mako.

The Gulf of Maine (GOM) commercial lobster fishery has approximately 3.5 million actively fished traps and captures several nontargeted groundfish species, including Atlantic Cod Gadus morhua, as bycatch, yet there has been limited research on the incidental mortality of groundfish in this fishery. Although the mortality of Atlantic Cod has been estimated in other GOM commercial fisheries, unaccounted discard mortality in the lobster fishery may impair recovery efforts for this stock. To help meet research needs, we assessed the discard mortality rate of Atlantic Cod captured in the Maine Lobster Management Zone G commercial lobster fishery using acoustic transmitters and observations of viability. From 2016 to 2017, 111 Atlantic Cod were captured in 18,853 individual trap hauls and were observed for viability. A subsample of 54 Atlantic Cod was externally tagged with acoustic transmitters and observed after release. The combined at‐vessel mortality (9.3%) and model‐based long‐term discard mortality (17.1%) estimates indicated an overall discard mortality rate of 24.8% for Atlantic Cod captured in commercial lobster gear. Based on this finding and the low bycatch of Atlantic Cod in the lobster fishery, the commercial lobster fishery may not be responsible—to the extent previously assumed—for hindering the GOM Atlantic Cod stock’s regrowth.

Chondrichthyan fishes are among the most threatened vertebrates on the planet because many species have slow life histories that are outpaced by intense fishing. The Western Central Atlantic Ocean, which includes the Greater Caribbean, is a hotspot of chondrichthyan biodiversity and abundance, but has been characterized by extensive shark and ray fisheries and a lack of sufficient data for effective management and conservation. To inform future research and management decisions, we analysed patterns in chondrichthyan extinction risk, reconstructed catches and management engagement in this region. We summarized the extinction risk of 180 sharks, rays and chimaeras, including 66 endemic and 14 near-endemic species, using contemporary IUCN Red List assessments. Over one-third (35.6%) were assessed as Vulnerable, Endangered or Critically Endangered, primarily due to overfishing. Reconstructed catches from 1950 to 2016 peaked in 1992, then declined by 40.2% thereafter. The United States, Venezuela and Mexico were responsible for most catches in the region and hosted the largest proportions of the regional distributions of threatened species, largely due to having extensive coastal habitats in their Exclusive Economic Zones. The quantity and taxonomic resolution of fisheries landings data were poor in much of the region, and national-level regulations varied widely across jurisdictions. Deepwater fisheries represent an emerging threat, although many deepwater chondrichthyans currently have refuge beyond the depths of most fisheries. Regional collaboration as well as effective and enforceable management informed by more complete fisheries data, particularly from small-scale fisheries, are required to protect and recover threatened species and ensure sustainable fisheries.

The Atlantic sea scallop Placopecten magellanicus dredge fishery is one of the most lucrative commercial fishing industries in the northeastern United States, and fish bycatch can comprise up to~42% of the total catch. Benthic species, such as flatfish, are particularly susceptible to unintended capture in scallop dredge gear, and mitigating bycatch and associated mortality has been mandated a priority for fisheries management. Based on this management need, the present study evaluated the physical, physiological, and behavioral stress responses of Yellowtail Flounder Limanda ferruginea, Windowpane Scophthalmus aquosus, and Fourspot Flounder Paralichthys oblongus to capture in the scallop dredge fishery. More specifically, we used generalized additive models and linear regression models to assess the influence of various fishing practices, environmental conditions, and biological factors on injury condition, physiological parameters, and reflex indicators. Although these flatfish species appeared to be physically resilient to capture based on an observable injury assessment, dredge capture and handling factors proved stressful, with the degree of immediate mortality, physiological disturbances, and reflex impairment varying by species. While multiple factors influenced the degree of stress in these species, based on our results the reduction of tow duration and limiting air exposure/sorting duration would likely be the most effective strategies to mitigate the impact of scallop dredge fishing on these flatfish species.

The Northwest Atlantic (NWA) population of porbeagles Lamna nasus is susceptible to capture in rod-and-reel fisheries and most individuals are discarded alive due to catch and size limits. To estimate post-release survival, pop-off satellite archival tags were attached to porbeagles captured with rod-and-reel. Fourteen tags were deployed, of which 13 transmitted. All sharks for which we had data survived, giving a post-release survival rate of 100%. Following release, 6 individuals remained in surface waters for several hours to days, while 2 individuals immediately resumed normal diving behaviors. For the remaining sharks (n = 5), low tag transmission resolution precluded the detection of fine scale post-release behavior. The duration of initial depth-holding behavior was characterized using a break-point analysis of dive track variance, which suggests porbeagles exhibited a median post-release recovery period of 116 h (10th and 90th percentiles = 68.8 and 280.1 h) following capture and handling. Our preliminary study suggests immature porbeagles are resilient to capture and handling, although more data would provide stronger support for management recommendations.