Chromatin structure imposes significant obstacles on all aspects of transcription that are mediated by RNA polymerase II. The dynamics of chromatin structure are tightly regulated through multiple mechanisms including histone modification, chromatin remodeling, histone variant incorporation, and histone eviction. In this Review, we highlight advances in our understanding of chromatin regulation and discuss how such regulation affects the binding of transcription factors as well as the initiation and elongation steps of transcription.

With advances in the effectiveness of treatment and disease management, the contribution of chronic comorbid diseases (comorbidities) found within the Charlson comorbidity index to mortality is likely to have changed since development of the index in 1984. The authors reevaluated the Charlson index and reassigned weights to each condition by identifying and following patients to observe mortality within 1 year after hospital discharge. They applied the updated index and weights to hospital discharge data from 6 countries and tested for their ability to predict in-hospital mortality. Compared with the original Charlson weights, weights generated from the Calgary, Alberta, Canada, data (2004) were 0 for 5 comorbidities, decreased for 3 comorbidities, increased for 4 comorbidities, and did not change for 5 comorbidities. The C statistics for discriminating in-hospital mortality between the new score generated from the 12 comorbidities and the Charlson score were 0.825 (new) and 0.808 (old), respectively, in Australian data (2008), 0.828 and 0.825 in Canadian data (2008), 0.878 and 0.882 in French data (2004), 0.727 and 0.723 in Japanese data (2008), 0.831 and 0.836 in New Zealand data (2008), and 0.869 and 0.876 in Swiss data (2008). The updated index of 12 comorbidities showed good-to-excellent discrimination in predicting in-hospital mortality in data from 6 countries and may be more appropriate for use with more recent administrative data.

Yeast Rpd3 histone deacetylase plays an important role at actively transcribed genes. We characterized two distinct Rpd3 complexes, Rpd3L and Rpd3S, by MudPIT analysis. Both complexes shared a three subunit core and Rpd3L contains unique subunits consistent with being a promoter targeted corepressor. Rco1 and Eaf3 were subunits specific to Rpd3S. Mutants of RCO1 and EAF3 exhibited increased acetylation in the FLO8 and STE11 open reading frames (ORFs) and the appearance of aberrant transcripts initiating within the body of these ORFs. Mutants in the RNA polymerase II-associated SET2 histone methyltransferase also displayed these defects. Set2 functioned upstream of Rpd3S and the Eaf3 methyl-histone binding chromodomain was important for recruitment of Rpd3S and for deacetylation within the STE11 ORF. These data indicate that Pol II-associated Set2 methylates H3 providing a transcriptional memory which signals for deacetylation of ORFs by Rpd3S. This erases transcription elongation-associated acetylation to suppress intragenic transcription initiation.

The oxygen reduction reaction (ORR) is an important electrode reaction for energy storage and conversion devices based on oxygen electrocatalysis. This paper introduces the thermodynamics, reaction kinetics, reaction mechanisms, and reaction pathways of ORR in aqueous alkaline media. Recent advances of the catalysts for ORR were extensively reviewed, including precious metals, nonmetal-doped carbon, carbon–transition metal hybrids, transition metal oxides with spinel and perovskite structures, and so forth. The applications of those ORR catalysts to zinc–air batteries and alkaline fuel cells were briefly introduced. A concluding remark summarizes the current status of the reaction pathways, advanced catalysts, and the future challenges of the research and development of ORR.

The results on their own are not definitive, but the promising findings should stimulate further research to clarify the potential benefits of micronutrient supplements.

Graphene nanoribbons (GNRs) are excellent candidates for next-generation electronic materials. Unlike GNRs produced by "top-down" methods such as lithographical patterning of graphene and unzipping of carbon nanotubes that cannot reach structural perfection, the fabrication of structurally well-defined GNRs has been achieved by a "bottom-up" organic synthesis via solution-mediated or surface-assisted cyclodehydrogenation. Specifically, non-planar polyphenylene precursors were first "build up" from small molecules, and then "graphitized" and "planarized" to yield GNRs. However, fabrication of processable and longitudinally well-extended GNRs has remained a major challenge. Here we report a "bottom-up" solution synthesis of long (>200 nm), liquid-phase processable GNRs with well-defined structure and a large optical bandgap of 1.88 eV. Scanning probe microscopy demonstrates self-assembled monolayers of GNRs, and non-contact, time-resolved Terahertz conductivity measurements reveal excellent charge-carrier mobility within individual GNRs. Such structurally well-defined GNRs offer great opportunities for fundamental studies into graphene nanostructures, as well as development of GNR-based nanoelectronics.DOI: 10.1038/NCHEM.1819 http://www.nature.com/nchem/journal/v6/n2/abs/nchem.1819.html 2 Graphene nanoribbons (GNRs), defined as nanometre-wide strips of graphene, are attracting increasing attention as highly promising candidates for next generation semiconductor materials 1,2,3,4 . Quantum confinement effects impart GNRs with semiconducting properties, i.e. with a finite bandgap, which critically depends on the ribbon width and its edge structure 1,3 . Fabrication of GNRs has been primarily carried out by "top-down" approaches such as lithographical patterning of graphene 5,6 and unzipping of carbon nanotubes 7,8 , revealing their semiconducting nature and excellent transport properties 1 . However, these methods are generally limited by low yields and lack of structural precision, leading to GNRs with uncontrolled edge structures.In contrast, a "bottom-up" chemical synthetic approach based on solution-mediated 9,10,11,12,13 or surface-assisted 14 cyclodehydrogenation, namely "graphitization" and "planarization", of tailor-made three-dimensional polyphenylene precursors offers an appealing strategy for making structurally well-defined and homogeneous GNRs. The polyphenylene precursors are built up from small molecules, and thus their structures can be tailored within the capabilities of modern synthetic chemistry 15 . However, GNRs (>30 nm) produced by solution-mediated methods have been precluded from unambiguous structural characterization, i.e. microscopic visualization, due to their limited processability 9,12 . On the other hand, GNRs produced by the surface-assisted protocol have been characterized to be atomically precise using scanning tunnelling microscopy (STM) 14 . Nevertheless, this method can only provide a limited amount of GNR material, which is further bound to a metal surface, impeding wide...

Vascular endothelial growth factor (VEGF) was recently identified as a secreted, direct-acting mitogen specific for vascular endothelial cells and capable of stimulating angiogenesis in vivo. Molecular cloning revealed multiple forms of VEGF, apparently arising from alternative splicing of its RNA transcript. We have examined various human cDNA libraries by the polymerase chain reaction technique and discovered a fourth molecular form, VEGF206. This form contains a 41-amino acid insertion relative to the most abundant form, VEGF165, and includes the highly basic 24-amino acid insertion found in VEGF189. Southern blot analysis revealed that a single gene encoded these various forms, and nucleic acid sequence analysis of a portion of the VEGF gene revealed an intron/exon structure compatible with alternative splicing of RNA as a mechanism for their generation. Transient transfection of human embryonic kidney 293 cells showed that, like VEGF189, VEGF206 was predominately cell-associated and only very poorly secreted despite the presence of the signal peptide identical to that found in VEGF121 and VEGF165, both of which are efficiently exported from the cell. Vascular permeability activity was detected in the medium of 293 cells transfected with all four forms of VEGF; however, endothelial cell mitogenic activity was apparent only with VEGF121 and VEGF165. Thus, alternative splicing of VEGF RNA can produce four polypeptides with strikingly different secretion patterns, which suggests multiple physiological roles for this family of proteins.

SUMMARY The decision by a cell to enter a round of growth and division must be intimately coordinated with nutrient availability and its metabolic state. These metabolic and nutritional requirements, and the mechanisms by which they induce cell growth and proliferation, remain poorly understood. Herein, we report that acetyl-CoA is the downstream metabolite of carbon sources that represents a critical metabolic signal for growth and proliferation. Upon entry into growth, intracellular acetyl-CoA levels increase substantially and consequently induce the Gcn5p/SAGA-catalyzed acetylation of histones at genes important for growth, thereby enabling their rapid transcription and commitment to growth. Thus, acetyl-CoA functions as a carbon-source rheostat that signals the initiation of the cellular growth program by promoting the acetylation of histones specifically at growth genes.