Temperature and photoperiod regulate key fitness traits in plants and animals. However, with temperature increase due to global warming, temperature cue thresholds are experienced at shorter photoperiods, disrupting the optimal seasonal timing of physiological, developmental and reproductive events in many species. Understanding the mechanisms of adaptation to the asynchrony between temperature and photoperiod is key to inform our understanding of how species will respond to global warming. Here, we studied the transgenerational mechanisms of responses of the cyclical parthenogen Daphnia magna to different photoperiod lengths co-occurring with warm temperature thereby assessing the impact of earlier spring warming on its fitness. Daphnia uses temperature and photoperiod cues to time dormancy, and to switch between sexual and asexual reproduction. Daphnia life cycle offers the opportunity to measure the relative contribution of plastic and genetic responses to environmental change across generations and over evolutionary time. We use transgenerational common garden experiments on three populations ‘resurrected’ from a biological archive experiencing temperature increase over five decades. Our results suggest that response to early spring warming evolved underpinned by a complex interaction between plastic and genetic mechanisms while a positive maternal contribution at matching environments between parental and offspring generation was also observed.

Background Research around the weedkiller Roundup is among the most contentious of the twenty-first century. Scientists have provided inconclusive evidence that the weedkiller causes cancer and other life-threatening diseases, while industry-paid research reports that the weedkiller has no adverse effect on humans or animals. Much of the controversial evidence on Roundup is rooted in the approach used to determine safe use of chemicals, defined by outdated toxicity tests. We apply a system biology approach to the biomedical and ecological model species Daphnia to quantify the impact of glyphosate and of its commercial formula, Roundup, on fitness, genome-wide transcription and gut microbiota, taking full advantage of clonal reproduction in Daphnia. We then apply machine learning-based statistical analysis to identify and prioritize correlations between genome-wide transcriptional and microbiota changes. Results We demonstrate that chronic exposure to ecologically relevant concentrations of glyphosate and Roundup at the approved regulatory threshold for drinking water in the US induce embryonic developmental failure, induce significant DNA damage (genotoxicity), and interfere with signaling. Furthermore, chronic exposure to the weedkiller alters the gut microbiota functionality and composition interfering with carbon and fat metabolism, as well as homeostasis. Using the “Reactome,” we identify conserved pathways across the Tree of Life, which are potential targets for Roundup in other species, including liver metabolism, inflammation pathways, and collagen degradation, responsible for the repair of wounds and tissue remodeling. Conclusions Our results show that chronic exposure to concentrations of Roundup and glyphosate at the approved regulatory threshold for drinking water causes embryonic development failure and alteration of key metabolic functions via direct effect on the host molecular processes and indirect effect on the gut microbiota. The ecological model species Daphnia occupies a central position in the food web of aquatic ecosystems, being the preferred food of small vertebrates and invertebrates as well as a grazer of algae and bacteria. The impact of the weedkiller on this keystone species has cascading effects on aquatic food webs, affecting their ability to deliver critical ecosystem services.

Environmental sex determination implies that sex is defined by environmental factors influencing the maternal organism and/or oocytes. It provides population sex ratios that will maximise the sustainability of the population under incipient environmental conditions. Environmental factors responsible for sex determination include temperature, photoperiod, food availability, and population density. These cues stimulate the release of chemical signalling molecules (i.e. hormones) that determine the sex of newborns. We have analysed the responses of three Daphnia pulex clones (I, K, and S), isolated from different natural populations, to juvenile hormone methyl farnesoate (MF) in terms of survivorship, fecundity, production of males and ephippia, and expression of genes involved in sex determination (dsx1) and hormonal regulation (JHAMT, Met, RXR). Clonal individuals were exposed to: (1) high MF concentration (0.8 µM) combined with stressful conditions; (2) low MF concentration (0.15 µM) combined with optimal conditions of population density and food availability in two subsequent generations. The genetically different clones of D. pulex differed in the propensity for male and ephippia production and in the sensitivity to the stimuli that lead to the switch from parthenogenetic to sexual reproduction. A significant induction of male production was observed in all three clones when exposed to MF. In conditions mimicking crowding, only clone S produced male offspring even in absence of MF and showed higher expression levels of JHAMT and dsx1 genes. This response suggests that clone S has a high propensity to produce males probably due to a high sensitivity of receptors to environmental stimuli activating the endogenous biosynthesis of MF. However, clone S exposed to high MF concentration produced fewer males than clones I and K, which generally have a low natural propensity to produce males. High MF concentration coupled with conditions mimicking crowding, probably activated a feedback mechanism in clone S via the differential modulation of genes involved in the synthesis as well in the degradation of MF. Exposure to low MF concentration for two subsequent generations resulted in a reduction of male progeny production from the first (G1) to the second (G2) generation. All analysed genes were up‐regulated in both generations treated with MF, but with lower expression in G2. The reduced up‐regulation of the dsx1 gene matched with the lower male production. Based on our results and literature data, we hypothesised that the maternal dsx1 mRNA probably plays some role early in oocyte development, and causes the eggs that receive the dsx1 signal to develop into males. Exposure to MF for two generations significantly increased ephippia production. These results suggest that the induction of male and ephippia might have a common root in the MF pathway. The effect of MF on life‐history traits (delay in the age at maturity and fecundity reduction), sex ratio, and ephippia production suggests a direct impact of the juv...

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Methyl farnesoate (MF), a juvenile hormone, can influence phenotypic traits and stimulates male production in daphnids. MF is produced endogenously in response to stressful conditions, but it is not known whether this hormone can also be released into the environment to mediate stress signaling. In the present study, for the first time, a reliable solid-phase microextraction–gas chromatography–mass spectrometry (SPME-GC-MS) method was developed and validated for the ultra-trace analysis of MF released in growth medium by Daphnia pulex maintained in presence of crowding w/o MK801, a putative upstream inhibitor of MF endogenous production. Two different clonal lineages, I and S clones, which differ in the sensitivity to the stimuli leading to male production, were also compared. A detection limit of 1.3 ng/L was achieved, along with good precision and trueness, thus enabling the quantitation of MF at ultra-trace level. The achieved results demonstrated the release of MF by both clones at the 20 ng/L level in control conditions, whereas a significant decrease in the presence of crowding was assessed. As expected, a further reduction was obtained in the presence of MK801. These findings strengthen the link between environmental stimuli and the MF signaling pathway. Daphnia pulex, by releasing the juvenile hormone MF in the medium, could regulate population dynamics by means of an autoregulatory feedback loop that controls the intra- and extra-individual-level release of MF produced by endogenous biosynthesis.