We present a method capable of calculating elastic scanning tunneling microscopy (STM) currents from localized atomic orbital density functional theory (DFT). To overcome the poor accuracy of the localized orbital description of the wave functions far away from the atoms, we propagate the wave functions, using the total DFT potential. From the propagated wave functions, the Bardeen's perturbative approach provides the tunneling current. To illustrate the method we investigate carbon monoxide adsorbed on a Cu(111) surface and recover the depression/protrusion observed experimentally with normal/CO-functionalized STM tips. The theory furthermore allows us to discuss the significance of s-and p-wave tips.

We describe a first principles method to calculate scanning tunneling microscopy (STM) images, and compare the results to well-characterized experiments combining STM with atomic force microscopy (AFM). The theory is based on density functional theory (DFT) with a localized basis set, where the wave functions in the vacuum gap are computed by propagating the localized-basis wave functions into the gap using a real-space grid. Constant-height STM images are computed using Bardeen's approximation method, including averaging over the reciprocal space. We consider copper adatoms and single CO molecules adsorbed on Cu(111), scanned with a single-atom copper tip with and without CO functionalization. The calculated images agree with state-of-the-art experiments, where the atomic structure of the tip apex is determined by AFM. The comparison further allows for detailed interpretation of the STM images.

Achieving a high intensity in inelastic scanning tunneling spectroscopy (IETS) is important for precise measurements. The intensity of the IETS signal can vary by up to a factor of 3 for various tips without an apparent reason accessible by scanning tunneling microscopy (STM) alone. Here, we show that combining STM and IETS with atomic force microscopy enables carbon monoxide front-atom identification, revealing that high IETS intensities for CO/Cu(111) are obtained for single-atom tips, while the intensity drops sharply for multiatom tips. Adsorption of the CO molecule on a Cu adatom [CO/Cu/Cu(111)] such that the molecule is elevated over the substrate strongly diminishes the tip dependence of IETS intensity, showing that an elevated position channels most of the tunneling current through the CO molecule even for multiatom tips, while a large fraction of the tunneling current bypasses the CO molecule in the case of CO/Cu(111). DOI: 10.1103/PhysRevB.93.165415 Inelastic electron tunneling spectroscopy (IETS) with scanning tunneling microscopy (STM) is an effective method to analyze the vibrational modes of a single adsorbed molecule with subnanometer lateral resolution [1,2]. The vibrational energy of a molecule on a substrate strongly depends on the surrounding environment, such as the substrate structure and composition [3]. By studying these subtle changes of the vibrational energy using STM-IETS with a molecularfunctionalized tip, it has been demonstrated that STM-IETS can provide information on the inner structure of a molecule [4,5] similarly to atomic force microscopy (AFM) [6]. These advantages of STM-IETS have accelerated research in related fields [7][8][9][10][11][12][13][14][15][16]. Owing to recent progress in the theoretical description of IETS [17][18][19][20][21][22], the qualitative understanding has been improved considerably: the symmetry of the wave functions of a tip and a molecule on a substrate and a vibrational mode of the molecule are predicted to influence the efficiency of the inelastic process (γ inel ) for the tunneling current involving the molecule. In order to discuss γ inel on the basis of the intensity of IETS, we have to consider that IETS intensity is described by the multiplication of two factors: (1) the ratio of the tunneling current passing through a molecule to the total tunneling current (I molecule /I total ) and (2) the efficiency of the inelastic process (γ inel ). These factors should in principle be affected by the geometrical structure of the substrate and of the tip.The geometrical structure of a metal tip apex can be determined by using carbon monoxide (CO) front-atom identification (COFI) provided by AFM [23,24], where the tip apex of a force sensor is probed by a CO molecule that stands upright on a metal surface [inset of Fig. 1(e)]. The metallic tip apex atom has a dipole moment induced by the Smoluchowski effect [25], whose direction is the same as that of the CO molecule adsorbed on the surface [26]. Thus in the distance regime where the electrostatic int...

Initial differential diagnosis and prognosis for patients admitted to intensive care with suspected sepsis remain arduous. Hepcidin has emerged as a potential biomarker for sepsis. Here we report data on the relevance of levels of hepcidin versus other biomarkers as a diagnostic and prognostic tool for sepsis. 164 adult patients admitted to the intensive care unit (ICU) within 24 h upon arrival to the hospital were included. Blood samples collected daily for seven consecutive days and hepcidin levels, heparin binding protein (HBP) levels and standard biomarkers were determined. Blood cultures were initiated at inclusion. Clinical scores were evaluated daily and mortality after 28- and 180-days was recorded. One hundred of the patients were found to fulfil the criteria for sepsis whereas 64 did not. Hepcidin levels at admission were significantly higher in the septic than in the non-septic patients. In septic patients hepcidin levels declined significantly already at 24 h followed by a steady decline. A significant negative correlation was observed between hepcidin levels and SAPS 3 in patients with sepsis. Hepcidin levels at inclusion were significantly higher among septic patients that survived 180-days and predicted mortality. Our data show that hepcidin levels are indicative of sepsis in patients admitted to the ICU and has a prognostic value for mortality.