MotivationThe BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables includedThe database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grainBioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).Time period and grainBioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurementBioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format.csv and .SQL.

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The world's ecosystems are experiencing unparalleled rates of biodiversity change, with invasive species implicated as one of the drivers that restructure local assemblages. Here we focus on the processes leading to biodiversity change in a biodiversity hotspot, the Brazilian Cerrado. The null expectation that invasion leads to increase in local species richness is supported by our investigation of the grass layer in two key habitats (campo sujo and campo úmido). Our analysis uncovered a linear relationship between total richness and invasive richness at the plot level. However, because the invasive species—even though few in number—are widespread, their contribution to local richness (α-diversity) is offset by their homogenizing influence on composition (β-diversity). We thus identify a mechanism that can help explain the paradox that species richness is not declining in many local assemblages, yet compositional change is exceeding the predictions of ecological theory. As such, our results emphasize the importance of quantifying both α-diversity and β-diversity in assessments of biodiversity change in the contemporary world.

Questions How do newly established species interact with existing assemblage members to alter local biodiversity? This question is especially topical given growing concerns about increased temporal turnover levels relative to background rates. Pine (Pinus spp.), a major invasive taxon in the Southern Hemisphere, is progressively dominating remaining fragments of the Brazilian savanna (Cerrado), a biodiversity hotspot. Because the Cerrado's diversity is linked to habitat heterogeneity we argue that the impact of these invasive singleton pines will be mediated by differences in local habitat structure. Here we use isolated invasive pines (Pinus elliottii) in the Cerrado as a study system to test the prediction that changes in the diversity of native communities, in the presence of newly established exotic individuals, will be greatest in the dominant vegetation layer of a habitat. Location Itirapina Ecological Station, southeast of Brazil. Methods We used a stratified random survey in 5 m × 5 m pairs of plots invaded by a single pine individual, each matched by control uninvaded plots; both shrub and grass vegetation layers were sampled in both habitats. In total, 300 plots were sampled, 114 in the shrub‐dominated campo sujo and 186 in the grass‐dominated campo úmido. Results Over 400 plant species were recorded. In both habitats, we detect marked shifts in species richness of the dominant vegetation layer. In line with our prediction, the nature of these changes is mediated by local habitat structure. We find significantly reduced species richness in the shrub layer of the shrub‐dominated habitat, but elevated species richness in the grass layer of the grass‐dominated habitat in invaded sites (vs. control). In the grass layer of campo úmido, pine initially decreases dominance thus allowing more species to colonize the plots. Conclusions The shape of the diversity vs. establishment time relationship is layer‐dependent, with a significant relationship between dominance/evenness and pine size in the grass layer but no relationship in the shrub layer. Our results show that, although complex, the consequences for local biodiversity of non‐native species establishment are not haphazard and thus contribute to the understanding of species co‐existence.

RESUMO -Este estudo foi realizado em remanescente de Floresta Estacional Semidecidual (FES), localizado em Sorocaba (SP, Brasil), com o objetivo de verificar seu estágio sucessional e inferir sobre a composição futura. A hipótese deste artigo previa que esse remanescente apresentaria regeneração com baixa diversidade de espécies, predomínio de espécies pioneiras de dossel, ausência de espécies residentes no sub-bosque e predomínio de espécies anemocóricas e autocóricas. Foi utilizado o método de parcelas, considerando os indivíduos em três classes de tamanho, duas delas referentes ao sub-bosque e uma ao dossel (1 -<100 cm; 2 ->100 cm e circunferência à altura do solo <15 cm; 3 -CAP >15 cm). Foram amostradas 146 espécies, sendo os maiores valores de diversidade encontrados no dossel e nas espécies de sub-bosque da classe 2. A similaridade entre as três classes foi baixa. Das espécies com maior valor de importância, cinco são pioneiras e cinco são não pioneiras, e as espécies com maiores valores de regeneração natural são consideradas como não pioneiras e residentes. Contrariando a hipótese inicial, essas características, somadas ao predomínio de espécies zoocóricas nas três classes, indicam que o remanescente está em estágio intermediário de sucessão e possui condições microclimáticas para a entrada e permanência de espécies que necessitam de áreas mais sombreadas. Espécies como Aspidosperma olivaceum, Cordia trichotoma, Ocotea elegans e Guarea guidonia, consideradas não pioneiras e transitórias, foram amostradas somente nas classes 1 e 2, indicando a futura substituição de espécies e o avanço sucessional do remanescente.Palavras-chave: Regeneração natural; Sucessão secundária; Sub-bosque. STRUCTURE, FLORISTIC COMPOSITION AND SUCCESSIONAL CHARACTERIZATION OF FRAGMENTS OF SEMIDECIDUOUS SEASONAL FOREST IN SOUTHEAST BRAZIL

Highlights• We demonstrate that a "heterogeneity enhancer" increase diversity in the Restinga, a stressful tropical ecosystem.• Our results highlight the importance of evaluate the role played by individual species at different diversity scales.• Plant-plant interactions may increase diversity.• Conservation effort towards both the area and nurse species are crucial to maintaining plant diversity in Restinga forest. AbstractSome species make substantial contribution to habitat heterogeneity, supporting species coexistence.Dicksonia sellowiana Hook., an endangered tree fern, is a known phorophyte for epiphytes, has the potential 2 to be such a taxon. We tested the hypothesis that D. sellowiana increases plant diversity in Brazilian Restinga forest, a biodiversity hotspot, by augmenting the habitat heterogeneity at a fine scale. To do this we quantified α-diversity and β-diversity in three habitat types: on the tree fern trunks, immediately beneath the trunks and away from the trunks. In total, 40 ferns were sampled. Overall we recorded 2602 individuals belonging to 61 phanerophyte species in 30 families. The number of individuals sampled varied among habitats but rarefaction showed that richness did not differ. In contrast, species composition varied markedly amongst habitats. Both statistical approaches detected high levels of β-diversity, particularly between the species found in the vicinity of the fern, and those in the samples away from the trunks. Indicator species analysis was used to identify the species characteristic of the different habitats. About 30% of the species were exclusively found in "away plots", 17% were exclusively "below plots" and 15% were found only on the trunks, 13% were found on the trunks and below them, 12% on "bellow" and "away plots", 10% of species occurred in all areas and 3% were found on trunks and "away plots". Our results lead us to conclude that the endangered fern D. sellowiana plays an important role in promoting habitat heterogeneity within the Restinga forest. As this iconic species is threatened, its overexploitation may lead to impoverishment of plant communities. Conservation effort towards both the area and this species are crucial to maintaining Restinga plant diversity.

The Atlantic rain forest is in a very fragmented condition due to the high deforestation in recent decades, thus even remnants of secondary vegetation may be considered important for maintaining the ecological and microclimatic functions on a regional scale. This represents the first plant composition study conducted in the area, located in Sorocaba (São Paulo, Brazil), a region relatively unknown in terms of vegetation. Our aims were to survey the vegetation, verify the vegetation formation in which the sampled species occur and identify endangered species. Periodic samples of woody plants were conducted between September 2007 and December 2009. We found 166 species, belonging to 47 families and 102 genera; ten of these species are under threat of extinction. Our data substantially increase our knowledge of the diversity of the regional flora and will play a crucial role in developing conservation policy.

Major regional gaps exist in the reporting and accessibility of naturalized plant species distribution data, especially within Southeast Asia. Here, we present the Malesian Naturalized Alien Flora database (MalNAF), the first standardized island-group level checklist of naturalized vascular plant species for the Malesian phytogeographical region. We used MalNAF to investigate the composition, origins, and habitat preferences of the naturalized flora. The naturalized vascular flora of Malesia consists of at least 1177 species. Richness is highest in the Philippines (539 spp.) and lowest in the Maluku Islands (87 spp.). But, the Lesser Sunda Islands had the highest naturalized species richness relative to native richness and Singapore has a higher naturalized plant species richness than would be expected given its size. When comparing the data for Malesia with a global dataset, we found that naturalized richness increased with area for islands but not for continental regions. Across the archipelago, 31 species are widespread, occurring in every island group, but the majority have a limited distribution of 2.4 ± 2.3 (mean ± SD) island groups per naturalized species. The naturalized plant species are representatives of 150 families, twenty of which are newly introduced to the region. Families richest in naturalized plant species in Malesia were Fabaceae (= Leguminosae) (160 spp.), Poaceae (= Gramineae) (138 spp.), and Asteraceae (= Compositae) (96 spp.). Most of these have a native range that includes tropical Asia, closely followed by those from Southern America (inclusive of the Caribbean, Central and South America), although at the island-group level, most have a higher proportion with a Southern American native range. Most naturalized species occur in anthropogenic habitats, but many are present in “natural” habitats with fewer species, such as Leucaena leucocephala, reported from specialized habitats like drylands. MalNAF provides a baseline for future studies of naturalized plant species distributions in the region.