The genetic diversity of a set of hexaploid and tetraploid wheat germplasm at the IPK gene bank, Gatersleben, Germany was investigated by applying 13 wheat microsatellites (WMS). The materials consisted of 63 accessions of Triticum aestivum, T. dicoccon and T. durum obtained from different collection missions. In total, 126 alleles were detected with an average of 9.7 alleles per locus. The average PIC values per locus varied from 0.65 for the marker Xgwm192 to 0.88 for the marker Xgwm619. All the primer pairs revealed genetic heterogeneity in more than one genotype. Genetic dissimilarity values between genotypes, calculated by the WMS derived data, were used to produce a dendrogram. In the dendrogram the genotypes were clustered in nine clear groups.
Experimental results demonstrated clearly that the dominant Ph1 allele of chromosome 5B of wheat affects the homologous pairing of rye chromosomes. A rye-wheat monotelosomic 5BL addition line was produced and used for meiotic studies. Compared with 14-chromosome control plants, the 5BL addition to rye causes an increase in univalents and rod bivalent formation, i.e., a significant reduction of chiasma frequency (11.21 chiasmata per pollen mother cell). The 5BL telosome itself does not associate with any of the rye chromosomes. Thus, the double dosage of 5BL, present in hexaploid or octoploid triticale, could be one of the main causes of pairing failure of the rye genome.Key words: chromosome pairing, Ph1 locus, wheat, rye, rye-wheat addition.
Cauliflower (Brassica oleracea var. botrytis) is an important vegetable crop for human nutrition. We characterized 192 cauliflower accessions from the USDA and IPK genebanks with genotyping by sequencing (GBS). They originated from 26 different countries and represent about 44% of all cauliflower accessions in both genebanks. The analysis of genetic diversity revealed that accessions formed two major groups that represented the two genebanks and were not related to the country of origin. This differentiation was robust with respect to the analysis methods that included principal component analysis, ADMIXTURE and neighbor-joining trees. Genetic diversity was higher in the USDA collection and significant phenotypic differences between the two genebanks were found in three out of six traits investigated. GBS data have a high proportion of missing data, but we observed that the exclusion of single nucleotide polymorphisms (SNPs) with missing data or the imputation of missing SNP alleles produced very similar results. The results indicate that the composition and type of accessions have a strong effect on the structure of genetic diversity of ex situ collections, although regeneration procedures and local adaptation to regeneration conditions may also contribute to a divergence. Fst-based outlier tests of genetic differentiation identified only a small proportion (<1%) of SNPs that are highly differentiated between the two genebanks, which indicates that selection during seed regeneration is not a major cause of differentiation between genebanks. Seed regeneration procedures of both genebanks do not result in different levels of genetic drift and loss of genetic variation. We therefore conclude that the composition and type of accessions mainly influence the level of genetic diversity and explain the strong genetic differentiation between the two ex situ collections. In summary, GBS is a useful method for characterizing genetic diversity in cauliflower genebank material and our results suggest that it may be useful to incorporate routine genotyping into accession management and seed regeneration to monitor the diversity present in ex situ collections and to reduce the loss of genetic diversity during seed regeneration.
Vascular plants segment their body axis with iterative nodes of lateral branches and internodes. Appropriate node initiation and internode elongation are fundamental to plant fitness and crop yield formation; but how they are spatiotemporally coordinated remains elusive. We show that in barley (Hordeum vulgare L.), selections under domestication have extended the apical meristematic phase to promote node initiation, but constrained subsequent internode elongation. In both vegetative and reproductive axes, internode elongation displays a dynamic proximal - distal gradient, and among subpopulations of domesticated barleys at the global range, node initiation and proximal internode elongation are associated with latitudinal and longitudinal gradients, respectively. Genetic and functional analysis suggest that, in addition to their converging roles in node initiation, flowering time genes are repurposed to specify the dynamic internode elongation. Our study provides an integrated view of barley node initiation and internode elongation, and suggests that plant architecture has to be recognized as dynamic phytomeric units in the context of crop evolution.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
hi@scite.ai
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.