Abstract:Rising concentrations of atmospheric carbon dioxide are acidifying the world's oceans. Surface seawater pH is 0.1 units lower than pre-industrial values and is predicted to decrease by up to 0.4 units by the end of the century. This change in pH may result in changes in the physiology of ocean organisms, in particular, organisms that build their skeletons/shells from calcium carbonate, such as corals. This physiological change may also affect other members of the coral holobiont, for example, the microbial com… Show more
“…Ocean acidification also affects the community structure of bacteria associated with corals. It has been reported that the relative abundance of bacteria associated with diseased and stressed corals increased under decreasing pH conditions (Meron et al, 2011). A very limited number of studies focused on the effects of ocean acidification on isolated bacterial strains have also been reported.…”
Abstract. There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO 2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO 2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO 2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO 2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO 2 may influence bacterioplankton community structure.
“…Ocean acidification also affects the community structure of bacteria associated with corals. It has been reported that the relative abundance of bacteria associated with diseased and stressed corals increased under decreasing pH conditions (Meron et al, 2011). A very limited number of studies focused on the effects of ocean acidification on isolated bacterial strains have also been reported.…”
Abstract. There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO 2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO 2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO 2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO 2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO 2 may influence bacterioplankton community structure.
“…In our experiments corals were exposed to increasing acidification, for a final pH of 7.7, for only eight weeks. Other acidification studies used lower pH values of 7.3 (Meron et al 2011) and6.7 (Vega Thurber et al 2009). In these studies, an increase in Alphaproteobacteria and decrease in Deltaproteobacteria and Bacteroidetes was detected within the SML at pH 7.3 (Meron et al 2011), and a decrease in Alphaproteobacteria and increase in Beta-, Delta-and Epsilonproteobacteria was detected at pH 6.7 (Vega Thurber et al 2009).…”
Section: Comparison Between Speciesmentioning
confidence: 99%
“…Other acidification studies used lower pH values of 7.3 (Meron et al 2011) and6.7 (Vega Thurber et al 2009). In these studies, an increase in Alphaproteobacteria and decrease in Deltaproteobacteria and Bacteroidetes was detected within the SML at pH 7.3 (Meron et al 2011), and a decrease in Alphaproteobacteria and increase in Beta-, Delta-and Epsilonproteobacteria was detected at pH 6.7 (Vega Thurber et al 2009). Although the current acidification study did not involve microbial analysis, and did not detect changes in the SML thickness, the changes in microbial populations detected in other studies suggest that the SML is affected by acidification in other ways.…”
Section: Comparison Between Speciesmentioning
confidence: 99%
“…In addition to the protective physical properties, the SML also contains a microbial community that is crucial to the health of the coral (Bythell and Wild 2011). In the past ten years many studies have focused upon the composition and role of this microbial community Kellogg 2004;Bourne 2005;Guppy and Bythell et al 2006;Littman et al 2009;Shnit-Orland and Kushmaro 2009;Vega Thurber et al 2009;Meron et al 2011;Sweet et al 2011). This body of research has led to the development of the coral probiotic hypothesis, stating that coral-associated microbes may serve to protect their host based on their ability to rapidly evolve protection mechanisms .…”
Section: Introductionmentioning
confidence: 99%
“…For example, increased temperature and acidification caused the SML-associated microbial functional gene community to change (Vega Thurber et al 2009), and microbial communities shifted significantly at a lowered pH of 7.3 (Meron et al 2011). It was not determined in these studies whether the observed microbial functional gene and community shifts occurred in response to the changes in environmental conditions, or due to altered properties of the SML under the influence of these factors, which secondarily influenced the microbial communities.…”
Extraction of DNA is a key step in molecular biology experiments and important for counting tiny microbial individuals. Direct boiling and mechanical cell lysis like glass beads are two independent physical extraction methods, thus crossing the barriers of thresholds of magnitude in popular reagent kits or traditional spread plate method when non‐equilibrium phenomenon is ongoing. The two approaches above were combined to generate a new one. In three typical microbial species, direct boiling with glass beads significantly increased the purity of DNA solution compared with some other methods (p < 0.05). The qPCR results of them were closer to direct microscopy counting than some other methods. Therefore, it provides a new choice in extracting bacterial DNA for specific circumstances.
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