The population structure of an organism reflects its evolutionary history and influences its evolutionary trajectory. It constrains the combination of genetic diversity and reveals patterns of past gene flow. Understanding it is a prerequisite for detecting genomic regions under selection, predicting the effect of population disturbances, or modeling gene flow. This paper examines the detailed global population structure of Arabidopsis thaliana. Using a set of 5,707 plants collected from around the globe and genotyped at 149 SNPs, we show that while A. thaliana as a species self-fertilizes 97% of the time, there is considerable variation among local groups. This level of outcrossing greatly limits observed heterozygosity but is sufficient to generate considerable local haplotypic diversity. We also find that in its native Eurasian range A. thaliana exhibits continuous isolation by distance at every geographic scale without natural breaks corresponding to classical notions of populations. By contrast, in North America, where it exists as an exotic species, A. thaliana exhibits little or no population structure at a continental scale but local isolation by distance that extends hundreds of km. This suggests a pattern for the development of isolation by distance that can establish itself shortly after an organism fills a new habitat range. It also raises questions about the general applicability of many standard population genetics models. Any model based on discrete clusters of interchangeable individuals will be an uneasy fit to organisms like A. thaliana which exhibit continuous isolation by distance on many scales.
The Changjiang Estuary is a large bifurcated estuary where different hydrodynamic processes influence its South Branch compared to its North Branch. The South Branch is the dominant pathway of Changjiang River discharge, while the shallower and narrower North Branch is dominated by salt water intrusion, especially in the dry season. Absorption and fluorescence spectroscopy were measured along with dissolved organic carbon (DOC) concentrations to characterize the properties of dissolved organic matter (DOM) collected in different seasons during an extreme drought year in 2011. The refractory DOM from the Changjiang River flowed mainly through the South Branch, whereas in the lower South Branch, the input from the polluted Huangpu River contributed a large amount of biolabile DOM, demonstrating an anthropogenic perturbation from megacities. The DOM properties in the North Branch showed conservative behavior in the wet season, while noticeable addition was observed in the dry season, accompanied by the reversed flux of DOM from the North Branch to the South Branch, emphasizing the regular seasonal oscillation of the DOM dynamics in this monsoon-controlled bifurcated estuary. The estuarine turbidity maximum zones played distinct roles on DOM dynamics in different estuarine environments. The DOC and chromophoric DOM (CDOM) abundance in the Changjiang River and other Chinese rivers were at lower levels compared to other world rivers, showing a characteristic of the regional CDOM-poor features for many East Asia rivers.
The Jiulong River Estuary (JRE) is a typical subtropical macro-tide estuary on the southwest coast of the Taiwan Strait (TWS), which has been greatly impacted by human activities over the past 30 years. To understand nutrient dynamics and fluxes under such a heavy background of anthropogenic perturbation, eight cruises were conducted from April 2008 to April 2011, covering both wet (May to September) and dry (October to April next year) seasons. Nutrient concentrations were very high for the freshwater end-member in the upper reach of the JRE (nitrate (NO 3 In dry seasons, concentrations of these nutrients were higher than in wet seasons. Nitrate was the dominant chemical species of dissolved inorganic nitrogen (DIN), with percentages of 67%-96% in wet seasons and 55%-72% in dry seasons. Distributions of NO 3 -N and DSi against salinity were nearly constant during all cruises, and showed generally conservative mixing behaviors in the estuary (1
For decades, global carbon budget accounting has identified a “missing” or “residual” terrestrial sink; i.e., carbon dioxide (CO2) released by anthropogenic activities does not match changes observed in the atmosphere and ocean. We discovered a potentially large carbon sink in the most unlikely place on earth, irrigated saline/alkaline arid land. When cultivating and irrigating arid/saline lands in arid zones, salts are leached downward. Simultaneously, dissolved inorganic carbon is washed down into the huge saline aquifers underneath vast deserts, forming a large carbon sink or pool. This finding points to a direct, rapid link between the biological and geochemical carbon cycles in arid lands which may alter the overall spatial pattern of the global carbon budget.
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