2015
DOI: 10.3109/19401736.2015.1030630
|View full text |Cite
|
Sign up to set email alerts
|

The complete mitochondrial genome of the cryptic “lineage A” big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific

Abstract: In this study, the complete mitogenome sequence of the cryptic "lineage A" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) has been sequenced by the next-generation sequencing method. The assembled mitogenome consists of 16,605 bp, which includes 13 protein-coding genes, 22 transfer RNAs, and 2 ribosomal RNAs genes. The overall base composition of "lineage A" S. lessoniana is 37.5% for A, 17.4% for C, 9.1% for G, and 35.9% for T and shows 87% identities to "lineage C" S. lessoniana. It i… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1

Citation Types

0
2
0

Year Published

2020
2020
2022
2022

Publication Types

Select...
4

Relationship

2
2

Authors

Journals

citations
Cited by 4 publications
(2 citation statements)
references
References 4 publications
0
2
0
Order By: Relevance
“…Multiplex cytochrome oxidase c subunit I (COI) haplotype-specific PCR (MHS-PCR) was performed to identify the potential lineages of squids using the following primers: AF-5′-TCTCATGCTGGACCTTCAGTA-3′; AR-5′- TGCTCCTGCTAAAACAGGAAG -3′; BF-5′- ATTGGGGGTTTTGGTAACTGG -3′; BR-5′- GATGCTAAAAGGAGTGTGAGG -3′; C1F-5′- TTAGTTGGTACCTCACTAAGG -3′; C1R-5′- CTCTTTCAACTGCTGAGGAC -3′; C2F-5′- TTAGTTGGTACCTCACTAAGG -3′; C2R-5′- GTTGATATAGAATAGGGTCTCCC -3′. These haplotype-specific primers were designed based on bigfin reef squid samples collected around Taiwan ( Hsiao et al , 2016 ; Shen et al , 2016 ). PCR was performed using a PCR Thermal Cycler (Gene Atlas), each with 9.8‍ ‍μL of reaction solution containing 0.2‍ ‍ng template DNA, 0.3‍ ‍μM of each primer, 0.2‍ ‍mM dNTP mixture, 10× PCR buffer (20‍ ‍mM Tris–HCl pH 8.0, 15‍ ‍mM KCl, and 15‍ ‍mM MgCl 2 ), and 5‍ ‍U μL –1 DNA polymerase (Thermo Scientific).…”
Section: Methodsmentioning
confidence: 99%
“…Multiplex cytochrome oxidase c subunit I (COI) haplotype-specific PCR (MHS-PCR) was performed to identify the potential lineages of squids using the following primers: AF-5′-TCTCATGCTGGACCTTCAGTA-3′; AR-5′- TGCTCCTGCTAAAACAGGAAG -3′; BF-5′- ATTGGGGGTTTTGGTAACTGG -3′; BR-5′- GATGCTAAAAGGAGTGTGAGG -3′; C1F-5′- TTAGTTGGTACCTCACTAAGG -3′; C1R-5′- CTCTTTCAACTGCTGAGGAC -3′; C2F-5′- TTAGTTGGTACCTCACTAAGG -3′; C2R-5′- GTTGATATAGAATAGGGTCTCCC -3′. These haplotype-specific primers were designed based on bigfin reef squid samples collected around Taiwan ( Hsiao et al , 2016 ; Shen et al , 2016 ). PCR was performed using a PCR Thermal Cycler (Gene Atlas), each with 9.8‍ ‍μL of reaction solution containing 0.2‍ ‍ng template DNA, 0.3‍ ‍μM of each primer, 0.2‍ ‍mM dNTP mixture, 10× PCR buffer (20‍ ‍mM Tris–HCl pH 8.0, 15‍ ‍mM KCl, and 15‍ ‍mM MgCl 2 ), and 5‍ ‍U μL –1 DNA polymerase (Thermo Scientific).…”
Section: Methodsmentioning
confidence: 99%
“…In recent years, the coexistence of three cryptic lineages of S. lessoniana has been reported in the Indo-Pacific Ocean (Cheng et al, 2014;Tomano et al, 2016). These cryptic lineages of S. lessoniana exhibit similar morphology but are genetically distinct (Akasaki et al, 2006;Hsiao et al, 2016;Shen et al, 2016). Although the extent of cryptic diversity within the S. lessoniana species complex in Taiwan remains unclear, a single cryptic lineage may be predominant in northern Taiwan and the Penghu Islands, based on the migration pattern prediction.…”
Section: Prediction Of Ontogenetic Movement and Geographical Distribumentioning
confidence: 99%