The complete mitochondrial genome of Uroleucon erigeronense (Thomas, 1878) (Hemiptera: Aphididae)

Park, Jongsun; Lee, Wonhoon

doi:10.1080/23802359.2021.2008839

Cited by 3 publications

(2 citation statements)

References 31 publications

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Section: Methodsmentioning

confidence: 99%

“…All base pairs in the final assembled mitochondrial genome sequence were confirmed with BWA v. 0.7.17 (Li 2013) and SAMtools v. 1.9 (Li et al 2009) by correcting the misassembled bases. All bioinformatic analyses were conducted in the Genome Information System environment utilized in earlier genomic studies (Han et al 2017;Hong et al 2020b;Kim et al 2021c;Park et al 2019c;Park et al 2021c;Park & Lee 2022). Prime® v. 2020.2.4 (Biomatters Ltd., Auckland, New Zealand) was used to annotate the mitochondrial genome based on the previously sequenced mitochondrial genome of Melanoplus bivittatus (GenBank accession No.…”

Section: Dna Extraction Of M Differentialis Isolated In Koreamentioning

confidence: 99%

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Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea

Kim

Lee

et al. 2023

Entomological Research

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In this study, we determined the complete mitochondrial genome of the invasive insect species Melanoplus differentialis captured in Korea. The complete mitochondrial genome of M. differentialis is 15,625 bp long and comprises 13 protein‐coding genes, two ribosomal RNA genes, and 22 transfer RNAs, with a GC ratio of 25.2%. In total, 353 SNPs and 11 INDEL regions (total length 67 bp) were found against the previously sequenced M. differentialis mitochondrial genome recorded as public genome data. The number of interspecific variations was greater than the number of intraspecific variations in this insect. Phylogenetic tree analysis showed that the mitochondrial genome clustered the Melanoplus clade with two previously reported Melanoplus sequences. However, the sequences were not divided at the species‐level clade possibly as a consequence of misidentification caused by an error in the public database. Our results extend the molecular database status of Melanoplus by providing a novel complete mitochondrial genome sequence for M. differentialis that could serve as reference for further molecular studies.

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Section: Methodsmentioning

confidence: 99%

Section: Dna Extraction Of M Differentialis Isolated In Koreamentioning

confidence: 99%

Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea

Kim

Lee

et al. 2023

Entomological Research

Self Cite

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The complete chloroplast genome of Erigeron canadensis isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species

Park

2023

Korean J. Pl. Taxon

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We have determined the complete chloroplast genome of Erigeron canadensis isolated in Korea. The circular chloroplast genome of E. canadensis is 152,767 bp long and has four subregions: 84,317 bp of large single-copy and 18,446 bp of small single-copy regions are separated by 25,004 bp of inverted repeat regions including 133 genes (88 protein-coding genes, eight rRNAs, and 37 tRNAs). The chloroplast genome isolated in Korea differs from the Chinese isolate by 103 single-nucleotide polymorphisms (SNPs) and 47 insertions and deletion (INDEL) regions, suggesting different invasion sources of E. canadensis in Korea and China. A nucleotide diversity analysis revealed that the trend of the nucleotide diversity of E. canadensis followed that of 11 Erigeron chloroplasts, except for three peaks. The phylogenetic tree showed that our E. canadensis chloroplast is clustered with E. canadensis reported from China. Erigeron canadensis can be a good target when attempting to understand genetic diversity of invasive species.

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Insights into the Evolution of Aphid Mitogenome Features from New Data and Comparative Analysis

Zhang

Liu

et al. 2022

Animals

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The complete mitochondrial genomes and their rearrangement patterns can provide useful information for inferring evolutionary history of organisms. Aphids are one of the insect groups with some unique mitogenome features. In this study, to examine whether some features in aphid mitogenomes are independent species-specific evolutionary events or clade-specific events at certain taxonomic levels, we sequenced three new aphid mitogenomes (Hormaphidinae: Ceratovacuna keduensis, Pseudoregma panicola; Lachninae: Nippolachnus piri) and compared them with all known aphid mitogenomes. The three mitogenomes are 16,059–17,033 bp in length, with a set of 37 typical mitochondrial genes, a non-coding control region and a tandem repeat region. The gene orders of them are all highly rearranged. Within the subfamily Hormaphidinae, the presence of repeat region and mitogenome rearrangement in Cerataphidini species but not in the other two tribes indicate that these may be Cerataphidini-specific features. The same gene rearrangement pattern in the two Lachninae species, N. piri (Tuberolachnini) and Stomaphis sinisalicis (Stomaphidini), supports that this feature should be at least derived from the common ancestor of two tribes. Overall, our data and analyses provide new insights into the evolutionary patterns of gene rearrangement and repeat region in aphid mitogenomes, and further corroborate the potential role of gene rearrangement in elucidating the evolutionary history of different insect lineages.

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The complete mitochondrial genome of Uroleucon erigeronense (Thomas, 1878) (Hemiptera: Aphididae)

Cited by 3 publications

References 31 publications

Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea

Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea

The complete chloroplast genome of <I>Erigeron canadensis</I> isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species

Insights into the Evolution of Aphid Mitogenome Features from New Data and Comparative Analysis

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