SUMMARYThe vertebrate forebrain is patterned during gastrulation into telencephalic, retinal, hypothalamic and diencephalic primordia. Specification of each of these domains requires the concerted activity of combinations of transcription factors (TFs). Paradoxically, some of these factors are widely expressed in the forebrain, which raises the question of how they can mediate regional differences. To address this issue, we focused on the homeobox TF Six3.2. With genomic and functional approaches we demonstrate that, in medaka fish, Six3.2 regulates, in a concentration-dependent manner, telencephalic and retinal specification under the direct control of Sox2. Six3.2 and Sox2 have antagonistic functions in hypothalamic development. These activities are, in part, executed by Foxg1 and Rx3, which seem to be differentially and directly regulated by Six3.2 and Sox2. Together, these data delineate the mechanisms by which Six3.2 diversifies its activity in the forebrain and highlight a novel function for Sox2 as one of the main regulators of anterior forebrain development. They also demonstrate that graded levels of the same TF, probably operating in partially independent transcriptional networks, pattern the vertebrate forebrain along the anterior-posterior axis. Exploiting these advantages, here we delineate a gene regulatory network in which Six3.2 diversifies its activity in the forebrain. We demonstrate that differential expression levels of Six3.2, operating under the differential control of Sox2, are likely to pattern the forebrain by directly activating the telencephalic determinant Foxg1 (Tao and Lai, 1992), restraining, at the same time, the expression of the hypothalamic and retinal determinant Rx3 (Deschet et al., 1999;Loosli et al., 2001;Stigloher et al., 2006). We also show that Sox2, besides controlling Six3.2 expression, activates that of Rx3, thus establishing a four gene 'kernel' that contributes to forebrain specification.
MATERIALS AND METHODS
Medaka stocksWild-type (wt) Oryzias latipes of the cab strain were maintained in an inhouse facility (28°C on a 14/10-hour light/dark cycle). Embryos were staged according to Iwamatsu (Iwamatsu, 2004).
In silico analysisJaspar (http://jaspar.genereg.net) and rVista (http://rvista.dcode.org/) were used to identify putative TF binding sites (BSs) within the Six3.2 regulatory region, setting the core identity to ≥90%. Positive sites were further screened for evolutionary conservation by phylogenetic footprinting among different teleost species (Fugu rubripes, Gasteropus aculeatus, Tetraodon nigroviridis and Danio rerio) using mVista (http://genome.lbl.gov/vista/ mvista/about.shtml) and multalin (http://multalin.toulouse.inra.fr/multalin). Identified candidates were further selected using expression pattern information available in the literature and in the ZFIN database (http://zfin.org).
Plasmid constructionThe thymidine kinase (TK) minimal promoter was cloned into the pGL3-basic vector (Promega) to generate pGL3bTK, into which was then inserted PCR-amplified co...