Single
cell analysis strives to probe molecular heterogeneity in
morphologically similar cell populations through quantitative or qualitative
measurements of genetic, proteomic, or metabolic products. Here, we
applied mass analysis of single neurons to investigate cell–cell
signaling peptides. The multiplicity of endogenous cell–cell
signaling peptides is a common source of chemical diversity among
cell populations. Certain peptides can undergo post-translational
isomerization of select residues, which has important physiological
consequences. The limited number of single cell analysis techniques
that are sensitive to peptide stereochemistry make it challenging
to study isomerization at the individual cell level. We performed
capillary electrophoresis (CE) with mass spectrometry (MS) detection
to characterize the peptide content of single cells. Using complementary
trapped ion mobility spectrometry (TIMS) separations, we measured
the stereochemical configurations of three neuropeptide gene products
derived from the pleurin precursor in individual neurons (N = 3) isolated from the central nervous system of Aplysia californica. An analysis of the resultant mobility
profiles indicated >98% of the detectable pleurin-derived peptides
exist as the nonisomerized, all-l forms in individual neuron
cell bodies. However, we observed 44% of the Plrn2 peptide from the
pleurin precursor was present as the isomerized, d-residue-containing
form in the nerve tissue. These findings demonstrate an unusual distribution
of isomerized peptides in A. californica and establish
CE–TIMS MS as a powerful analytical tool for investigating
peptide stereochemistry at the single cell level.