Proteomic analysis of saffron (Crocus sativus L.) grown under conditions of cadmium toxicity

Rao, J. V.; Lv, Weide; Yang, Jumei

doi:10.14393/bj-v33n3-36923

Cited by 11 publications

(2 citation statements)

References 24 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Different proteins that were either upregulated or down-regulated in saffron under cadmium toxicity have been putatively identified using the MASCOT software search engine [ 85 ]. MaxQuant is a proteomics software for analysing large mass-spectrometric data sets [ 86 ].…”

Section: Bioinformatics For Omics Data Analysismentioning

confidence: 99%

Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome

2022

View full text Add to dashboard Cite

Saffron is a unique plant in many aspects, and its cellular processes are regulated at multiple levels. The genetic makeup in the form of eight chromosome triplets (2n = 3x = 24) with a haploid genetic content (genome size) of 3.45 Gbp is decoded into different types of RNA by transcription. The RNA then translates into peptides and functional proteins, sometimes involving post-translational modifications too. The interactions of the genome, transcriptome, proteome and other regulatory molecules ultimately result in the complex set of primary and secondary metabolites of saffron metabolome. These complex interactions manifest in the form of a set of traits ‘phenome’ peculiar to saffron. The phenome responds to the environmental changes occurring in and around saffron and modify its response in respect of growth, development, disease response, stigma quality, apocarotenoid biosynthesis, and other processes. Understanding these complex relations between different yet interconnected biological activities is quite challenging in saffron where classical genetics has a very limited role owing to its sterility, and the absence of a whole-genome sequence. Omics-based technologies are immensely helpful in overcoming these limitations and developing a better understanding of saffron biology. In addition to creating a comprehensive picture of the molecular mechanisms involved in apocarotenoid synthesis, stigma biogenesis, corm activity, and flower development, omics-technologies will ultimately lead to the engineering of saffron plants with improved phenome.

show abstract

Section: Bioinformatics For Omics Data Analysismentioning

confidence: 99%

Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome

2022

View full text Add to dashboard Cite

show abstract

“…Different proteins that were either upregulated or down-regulated in saffron under cadmium toxicity have been putatively identi ed using the MASCOT software search engine [120]. MaxQuant is a proteomics software for analysing large mass-spectrometric data sets [121].…”

Section: Bioinformatics For Omics Data Analysismentioning

confidence: 99%

Understanding Saffron Biology using Omics- and Bioinformatics Tools- A Step Towards Genome Modified Crocus sp.

Husaini¹,

Haq²,

Jiménez³

2021

Preprint

View full text Add to dashboard Cite

Saffron is a unique plant in many respects and its cellular processes are regulated at multiple levels. The genetic makeup in the form of eight chromosome triplets (2n = 3x = 24) with a haploid generic content (genome size) of 3.45 Gbp is decoded into different types of RNA by transcription. The RNA then translates into peptides and functional proteins, sometimes involving post-translational modifications too. The interactions of genome, transcriptome, proteome and other regulatory molecules ultimately result in the complex set of primary and secondary metabolites of saffron metabolome. These complex interactions manifest in the form of a set of traits ‘phenome’ peculiar to saffron. The phenome responds to the environmental changes occurring in and around saffron and modify its response in respect of growth, development, disease response, stigma quality, apocarotenoid biosynthesis, etc. Understanding these complex relations between different yet interconnected biological activities is quite challenging in saffron where classical genetics has a very limited role owing to its sterility, and the whole genome sequencing has not been done. Omics-based technologies are immensely helpful in overcoming these limitations and develop a better understanding of saffron biology. In addition to creating a comprehensive picture of the molecular mechanisms involved in apocarotenoid synthesis, stigma biogenesis, corm activity, flower development, etc. omics-technologies will ultimately lead to the engineering of saffron plants with improved phenome. In this review, we discuss the role of omics-technologies and bioinformatics tools in studying saffron biology, and in its improvement.

show abstract

SaffronOMICS: Novel Approaches Toward Putting Saffron Data at Work

Salami

Husaini

2022

Compendium of Plant Genomes

View full text Add to dashboard Cite

Proteomic analysis of saffron (Crocus sativus L.) grown under conditions of cadmium toxicity

Cited by 11 publications

References 24 publications

Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome

Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome

Understanding Saffron Biology using Omics- and Bioinformatics Tools- A Step Towards Genome Modified Crocus sp.

SaffronOMICS: Novel Approaches Toward Putting Saffron Data at Work

Contact Info

Product

Resources

About