Abstract. Impurity transport analysis based on argon impurity injection in sawtoothing plasmas in the presence of long lived inter-crash (m, n) = (1, 1) MHD activity is analysed in an ASDEX Upgrade discharge. In order to describe the time-evolution of the SXR time-traces after the impurity injection two sets of transport coefficients are necessary, switching at the onset of the (1, 1) mode. The non-linear time evolution of the background SXR emissivity which has to be subtracted in order to perform the transport analysis leads to systematic errors that cannot be eliminated from the analysis. In such conditions, typical experimental methods for the determination of the transport coefficients are demonstrated to be inapplicable and ideas for new ways to probe impurity transport in the presence of long-lived MHD activity are given. These can be then applied to study e.g. the mitigation of central impurity accumulation by ECRH which is most of the times accompanied by strong saturated (1, 1) modes.