Nonomuraea suaedae sp. nov., isolated from rhizosphere soil of Suaeda maritima (L.) Dumort

Lipun, Kenika; Teo, Wee Fei Aaron; Tongpan, Juthaporn; Matsumoto, Atsuko; Duangmal, Kannika

doi:10.1038/s41429-019-0159-y

Cited by 9 publications

(2 citation statements)

References 22 publications

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“…G+C content ranges from 64 to 73 mol%. Members of the genus are widely distributed and have been isolated from various natural habitats such as plant roots, terrestrial soils, mangrove sediments and cave soils [3,[6][7][8][9]. At the time of writing, the genus comprises 59 species with validly published names (https:// lpsn.…”

Section: Introductionmentioning

confidence: 99%

Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand

Lipun

Teo

Suksaard

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

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A novel actinobacterium, designated strain NN258T, was isolated from a cave soil sample collected from a karst cave at Khao No-Khao Kaeo, Nakhon Sawan province, Thailand. The morphological, chemotaxonomic and phylogenetic characteristics were consistent with its classification in the genus Nonomuraea . Strain NN258T showed the highest 16S rRNA gene sequence similarity values to Nonomuraea candida HMC10T, Nonomuraea mesophila 6K102T, Nonomuraea rubra DSM 43768T, Nonomuraea diastatica KC712T and Nonomuraea helvata IFO 14681T. The strain formed an extensively branched substrate and aerial mycelia. The whole-cell hydrolysates contained meso-diaminopimelic acid as the diagnostic diamino acid, with glucose, madurose, mannose and ribose as the whole-cell sugars. The polar lipids were diphosphatidylglycerol, phosphotidylmethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylmonomethylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannoside, two unidentified phospholipids, three unidentified sugar-containing phosphoaminolipids, an unidentified glycolipid and two unidentified lipids. The predominant menaquinone was MK-9(H4), with minor amounts of MK-9(H0), MK-9(H2) and MK-9(H6). Major cellular fatty acids (>10%) were iso-C16 : 0 and 10-methyl-C17 : 0. The G+C content of the genomic DNA was 71.0 mol%. The average nucleotide identity and digital DNA–DNA hybridization values between strain NN258T and the reference strains were 79.9–80.9 % and 26.1–27.0 %, respectively. On the basis of phenotypic, genotypic and phylogenetic data, strain NN258T represents a novel species of the genus Nonomuraea , for which the name Nonomuraea antri sp. nov. is proposed. The type strain is NN258T (=TBRC 11478T=NBRC 114269T).

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Section: Introductionmentioning

confidence: 99%

Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand

Lipun

Teo

Suksaard

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

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“…In addition, it is known that Nonomuraea rosea, Nonomuraea roseoviolacea, Nonomuraea rubra, Nonomuraea pusilla, Nonomuraea spiralis and Nonomuraea gerenzanensis produce deoxycephalomycin B, carminomicins, maduromycin, actinotiocin, pyralomicin and glycopeptide antibiotic A40926 [9][10][11][12][13][14][15]. Members of the genus have been isolated from diverse natural habitats such as rhizosphere [16,17], leaf [18], cave [19], limestone mine [20], root [5,21], coastal sediment [22], mangrove sediment [23] and mushroom compost [24], while many members were isolated from different types of soil including cave soil [25], forest soil [26,27], arid soil [28], acidic soil [29], rhizosphere soil [3,[30][31][32] and mangrove soil [33].…”

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confidence: 99%

Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.

Saygin

Nouioui

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

418

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Five actinobacteria isolates, KC201 T , KC401, KC310 T , KC712 T and 6K102 T , were recovered from the Karakum Desert during an investigation of novel actinobacteria with biotechnological potential. A polyphasic approach confirmed the affiliation of the strains to the genus Nonomuraea. The strains showed chemotaxonomic and morphological properties consistent with their classification in the genus Nonomuraea. Furthermore, these strains clearly distinguished and formed well supperted clades in phylogenetic and phylogenomic trees. Low ANI and dDDH values and distinguishing phenotypic properties between isolates KC201 T , KC310 T , KC712 T and 6K102 T showed that these strains belonged to novel Nonomuraea species, the names proposed for these taxa are Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov., with the type strains KC310 T (=CGMCC 4.

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Nonomuraea terrae sp. nov., isolated from arid soil

2020

Arch Microbiol

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Nonomuraea suaedae sp. nov., isolated from rhizosphere soil of Suaeda maritima (L.) Dumort

Cited by 9 publications

References 22 publications

Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand

Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand

Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.

Nonomuraea terrae sp. nov., isolated from arid soil

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