Nearly complete mitogenome of hairy sawfly, Corynis lateralis (Brullé, 1832) (Hymenoptera: Cimbicidae): rearrangements in the IQM and ARNS1EF gene clusters

Doğan, Özgül; Korkmaz, Ertan Mahir

doi:10.1007/s10709-017-9969-7

Cited by 13 publications

(14 citation statements)

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“…Genomes from four species were also used as outgroups (Mecoptera, Diptera, Megaloptera, and Coleoptera) (Table 1). The 27 species of Symphyta represented eight families: Tenthredinidae (Wei, Niu & Du, 2014; Wei, Wu & Liu, 2015; Song et al, 2015; Song et al, 2016; GY Niu, 2017, unpublished data), Cimbicidae (Song et al, 2016; Doğan & Korkmaz, 2017; YC Yan, 2019, unpublished data), Pergidae (Castro & Dowton, 2005), Orussidae (Dowton et al, 2009), Cephidae (Dowton et al, 2009; Korkmaz et al, 2015; Korkmaz et al, 2016; Korkmaz et al, 2017; Korkmaz et al, 2018), Argidae (Du et al, 2018), Megalodontesidae, and Pamphiliidae (Niu et al, 2019).…”

Section: Resultsmentioning

confidence: 99%

Characterization of the mitochondrial genome ofAnalcellicampa xanthosomagen. et sp. nov. (Hymenoptera: Tenthredinidae)

Niu

Zhang

et al. 2019

PeerJ

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A new genus with a new species of the tribe Hoplocampini of Hoplocampinae was described from China: Analcellicampa xanthosoma Wei & Niu, gen. et sp. nov. Hoplocampa danfengensis G. Xiao 1994 was designated as the type species of the new genus. The characters of Analcellicampa danfengensis (G. Xiao) comb. nov. were briefly discussed. A key to the tribes and known genera of Hoplocampinae was provided. The nearly complete mitochondrial genome of A. xanthosoma was characterized as having a length of 15,512 bp and containing 37 genes (22 tRNAs, 13 protein-coding genes (PCGs), and 2 rRNAs). The gene order of this new specimen was the same as that in the inferred insect ancestral mitochondrial genome. All PCGs were initiated by ATN codons and ended with TAA or T stop codons. All tRNAs had a typical cloverleaf secondary structure, except for trnS1. Remarkably, the helices H991 of rrnS and H47 of rrnL were redundant, while helix H563 of rrnL was highly conserved. A phylogeny based on previously reported symphytan mitochondrial genomes showed that A. xanthosoma is a sister group to Monocellicampa pruni, with high support values. We suggest that A. xanthosoma and M. pruni belong to the tribe Hoplocampini of Hoplocampinae.

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Section: Resultsmentioning

confidence: 99%

Characterization of the mitochondrial genome ofAnalcellicampa xanthosomagen. et sp. nov. (Hymenoptera: Tenthredinidae)

Niu

Zhang

et al. 2019

PeerJ

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“…The frequent rearrangement of the IQM cluster may be related to its close location to the replication origin due to illicit priming and/or illegitimate recombination (Wei et al ., ). Rearrangements of tRNA genes are known to be common in the derived hymenopteran suborder Apocrita, but there is accumulation of evidence that frequent rearrangements of tRNA genes are also common in Symphyta (Song et al ., ; Doğan & Korkmaz, ; Korkmaz et al ., ). Gene duplication frequently occurs due to slipped‐strand mispairing (Levinson & Gutman, ), but it has rarely been observed in arthropods presumably because of strong selective pressures, leading to rapid loss or transformation into pseudogenes of one of the duplicated elements (Wolstenholme, ).…”

Section: Discussionmentioning

confidence: 99%

Mitogenome organization and evolutionary history of the subfamily Cephinae (Hymenoptera: Cephidae)

Korkmaz

Doğan

Durel

et al. 2018

Systematic Entomology

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Cephinae represents one of the exclusively endophytophagous sawfly lineages with diverse host plant utilizations, in which most species have great economic importance. However, the evolutionary history of the subfamily has not been thoroughly investigated to date. Here, we characterized the mitogenomes of six species representing five genera of Cephinae. Rearrangements of the tRNA genes were found to be notably common. The rearrangements involve the IQM and TP gene clusters, and the former is a synapomorphy of the subfamily. In spite of the seldom occurrence of gene duplication in arthropods, three tRNA duplication events not known elsewhere in Symphyta were detected in Cephinae. The phylogeny of Cephinae was reconstructed using different datasets generated from mitochondrial genes and two nuclear fragments, EF‐1α and ITS2, under Bayesian inference (BI) and maximum likelihood (ML) approaches by adding the data of previously reported seven species. Five different tree topologies were recovered in which the tree produced from the nP12RNAexc4genes dataset under the BI and ML approaches was highly resolved with high support values. The phylogeny did not support the traditional tribal concept but it suggested two strongly supported clades. Diversification of the subfamily appears to correspond to a great extent to host plant availability and colonization in the Late Cretaceous, Early Eocene and Oligocene, suggesting speciation via host shift. The nonsynonymous substitutions and the most radical changes observed in mitochondrial protein‐coding genes were proposed as evidence for speciation driven by divergent adaptive selection.

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“…Phylogenetic analyses were performed based on aligned sequences of the 13 PCGs and two rRNAs of the nearly complete mitochondrial genome of A. bella and 21 other symphytan mitochondrial genomes downloaded from GenBank (Table 1). These additional taxa represented five families: Tenthredinidae (Wei, Wu & Liu, 2015; Wei, Niu & Du, 2014; Song et al, 2015a; Song et al, 2016), Cimbicidae (Song et al, 2016; Doǧan & Korkmaz, 2017), Pergidae (Castro & Dowton, 2005), Orussidae (Dowton et al, 2009a), and Cephidae (Dowton et al, 2009a; Korkmaz et al, 2015; Korkmaz et al, 2016; Korkmaz et al, 2017; Korkmaz et al, 2018). As the Symphyta is paraphyletic with respect to the suborder Apocrita, we also included the mitochondrial genomes of the apocritan species Parapolybia crocea (GenBank: KY679828) and Taeniogonalos taihorina (GenBank: NC027830) in the analysis.…”

Section: Methodsmentioning

confidence: 99%

“…The mitochondrial genomes of 21 symphytan species have been reported (Table 1; data were collected at NCBI, available at https://www.ncbi.nlm.nih.gov/; accessed 3 Nov. 2017). Five phylogenetic analyses have been conducted based on nucleotide sequences of symphytan mitochondrial genomes (Castro & Dowton, 2005; Dowton et al, 2009b; Song et al, 2015b; Song et al, 2016; Doǧan & Korkmaz, 2017), but none of them have provided clear insights into symphytan relationships because of the taxonomically restricted respresentation of sawfly families in the datasets: the mitochondrial genomes of Argidae, Xyelidae, Diprionidae, Heptamelidae, Blasticotomidae, Megalodontesidae, Pamphiliidae, Xiphydriidae, Siricidae, and Anaxyelidae have not been previously reported.…”

Section: Introductionmentioning

confidence: 99%

Characterization of the mitochondrial genome ofArge bellaWei & Du sp. nov. (Hymenoptera: Argidae)

Niu

Nyman

et al. 2018

PeerJ

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We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW-trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea.

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Nearly complete mitogenome of hairy sawfly, Corynis lateralis (Brullé, 1832) (Hymenoptera: Cimbicidae): rearrangements in the IQM and ARNS1EF gene clusters

Cited by 13 publications

References 54 publications

Characterization of the mitochondrial genome ofAnalcellicampa xanthosomagen. et sp. nov. (Hymenoptera: Tenthredinidae)

Characterization of the mitochondrial genome ofAnalcellicampa xanthosomagen. et sp. nov. (Hymenoptera: Tenthredinidae)

Mitogenome organization and evolutionary history of the subfamily Cephinae (Hymenoptera: Cephidae)

Characterization of the mitochondrial genome ofArge bellaWei & Du sp. nov. (Hymenoptera: Argidae)

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