Plants that inhabit Antarctica have raised scientific interest due to their resilience to climate change, abiotic tolerance mechanisms and potential biological applications. In vitro propagation is useful for conservation, genetic material availability of these species and avoiding mass collection in their habitat. In vitro culture protocols for the native plants Colobanthus quitensis and Deschampsia antarctica and the non-native Juncus bufonius have been affected by endophytic microorganisms that proliferate when introduced to tissue cultures. This study evaluated the microbicidal and phytotoxic effect of calcium hypochlorite (ca(clo) 2), silver nitrate (AgNO 3) and silver nanoparticles (AgNPs), and their use at different concentrations for different time periods. The Ca(ClO) 2 at 100 mg mL −1 showed the best microbial contamination control in D. antarctica (applied for 20 min) and for the three C. quitensis populations (applied for 15 min). In J. bufonius, AgNO 3 at 10 mg mL −1 for 10 min reduced the microbial growth, but oxidative damage was generated. AgNPs did not prevent contamination or have adverse effects on tissues. Survival plantlets from each treatment, population or species were effectively introduced to the tissue culture and their propagation was successful. these results constitute a fundamental advance for the introduction, propagation and conservation of Antarctic species and their use in scientific research. Global loss of biodiversity has increased considerably in recent years, which has made implementing conservation strategies essential for preserving and propagating plant genetic resources in each geographical region 1-3. One method of conservation is through the use of germplasm banks, or facilities and centers created to conserve genetic resources under favorable conditions to prolong their survival; the final objective is the ex-situ conservation of specific genetic diversity. They are a source of material that enables many possibilities for a species of interest, from developing new cultivable varieties, biological technologies, or to establishing ecological restoration plans 4. The Antarctic continent is an extreme ecosystem due to its adverse environmental conditions. Its organisms are exposed to restricted availability of water and nutrients, very low temperatures, frequent freezing and thawing cycles, prolonged periods of darkness in the winter and exposure to high UV radiation levels during summer. These environmental characteristics are inhospitable to most organisms that live in temperate areas 5. In addition, the increase in human activity in the region, and the confirmation that Antarctica is one of the critical points of global warming, make it a continent of highest priority for the conservation and development of multinational and multidisciplinary scientific challenges 6,7. There are only two native flowering plants that have been able to colonize some ice-free areas in the Antarctic Peninsula: Deschampsia antarctica Desv. (Poaceae) and Colobanthus quitensis (Kunth.) Bartl....