Glycine-rich
flexible peptide linkers have been widely adopted
in fusion protein engineering; however, they can hardly be cleaved
for the separation of fusion partners unless specific protease recognition
sites are introduced. Herein, we report the use of the peptidoglycan-targeting
staphylolytic enzyme lysostaphin to directly digest the glycine-rich
flexible linkers of various lengths including oligoglycine linkers
and (G4S)
x
linkers, without
the incorporation of extra amino acids. Using His-MBP-linker-LbCpf1
as a model substrate, we show that both types of linkers could be
digested by lysostaphin, and the digestion efficiency improved with
increasing linker length. The enzyme LbCpf1 retained full activity
after tag removal. We further demonstrated that the proteolytic activity
of lysostaphin could be well maintained under different environmental
conditions and in the presence of a series of chemical reagents at
various concentrations that are frequently used in protein purification
and stabilization. In addition, such a digestion strategy could also
be applied to remove the SUMO domain linked to LwCas13a via an octaglycine
linker. This study extends the applications of lysostaphin beyond
an antimicrobial reagent and demonstrates its potential as a novel,
efficient, and robust protease for protein engineering.