Several recent reports have suggested that microRNAs (miRNAs) might play critical roles in acute myocardial infarction (AMI). However, the miRNA expression signature in the early phase of AMI has not been identified. In this study, the miRNA expression signature was investigated in rat hearts 6 h after AMI. Compared with the expression signature in the noninfarcted areas, 38 miRNAs were differentially expressed in infarcted areas and 33 miRNAs were aberrantly expressed in the border areas. Remarkably, miR-21 expression was significantly down-regulated in infarcted areas, but was up-regulated in border areas. The down-regulation of miR-21 in the infarcted areas was inhibited by ischemic preconditioning, a known cardiac protective method. Overexpression of miR-21 via adenovirus expressing miR-21 (Ad-miR-21) decreased myocardial infarct size by 29% at 24 h and decreased the dimension of left ventricles at 2 weeks after AMI. Using both gain-of-function and loss-offunction approaches in cultured cardiac myocytes, we identified that miR-21 had a protective effect on ischemia-induced cell apoptosis that was associated with its target gene programmed cell death 4 and activator protein 1 pathway. The protective effect of miR-21 against ischemia-induced cardiac myocyte damage was further confirmed in vivo by decreased cell apoptosis in the border and infarcted areas of the infarcted rat hearts after treatment with Ad-miR-21. The results suggest that miRNAs such as miR-21 may play critical roles in the early phase of AMI. MicroRNAs (miRNAs)3 are endogenous, noncoding, singlestranded RNAs of ϳ22 nucleotides and constitute a novel class of gene regulators (1-3). Analogous to the first RNA revolution in the 1980s, when Zaug and Cech (4) discovered the enzymatic activity of RNA, the more recent discoveries of RNA interference and miRNA may represent the second RNA revolution (5).Although the first miRNA, lin-4, was discovered in 1993 (6, 7), their presence in vertebrates was confirmed only in 2001 (8). miRNAs are initially transcribed in the nucleus by RNA polymerase II or III to form large pri-miRNA transcripts (9). These pri-miRNAs are then processed by the RNase III enzymes, Drosha, Pasha, and Dicer, to generate 18-to 24-nucleotide mature miRNAs. In addition to this miRNA biogenesis pathway, some miRNA precursors are able to bypass Drosha processing to produce miRNAs via Dicer, possibly representing an alternative pathway for miRNA biogenesis (10, 11). The mature miRNAs bind to the 3Ј-untranslated region of their mRNA targets and negatively regulate gene expression via degradation or translational inhibition.Currently, about 600 miRNAs have been cloned and sequenced in humans, and the estimated number of miRNA genes is as high as 1,000 in the human genome (12, 13). Functionally, an individual miRNA is as important as a transcription factor because it is able to regulate the expression of its multiple target genes. As a group, miRNAs are estimated to regulate over 30% of the genes in a cell (14). It is thus not surprising th...

Water permeation across a single-walled carbon nanotube (SWNT) under the influence of a mobile external charge has been studied with molecular dynamics simulations. This designed nanopore shows an excellent on-off gating behavior by a single external charge (of value ؉1.0e): it is both sensitive to the available charge signal when it is close (less than a critical distance of 0.85 Å or about half the size of a water molecule) and effectively resistant to charge noise, i.e., the effect on the flow and net flux across the channel is found to be negligible when the charge is >0.85 Å away from the wall of the nanopore. This critical distance can be estimated from the interaction balance for the water molecule in the SWNT closest to the imposed charge with its neighboring water molecules and with the charge. The flow and net flux decay exponentially with respect to the difference between these two interaction energies when the charge gets closer to the wall of the SWNT and reaches a very small value once the charge crosses the wall, suggesting a dominating effect on the permeation properties from local water molecules near the external charge. These findings might have biological implications because membrane water channels share a similar single-file water chain inside these nanoscale channels.carbon nanotube ͉ molecular switch ͉ nanogate T he transportation of water molecules across nanometer water channels in membranes plays a key role in biological activities (1-8). It has been recognized that the existence of the charged residues in these water channels greatly reduces the permeation of protons across the channel but maintains quite stable water flows (4, 5, 9, 10). Moreover, because charges are indispensable in both membrane proteins and physiological solutions inside and outside the cells, it is also important to understand how external charges influence the water permeation.By using molecular dynamics simulations, the importance of the charged residues in channel proteins such as aquaporin (AQP) and Glpf on the behavior of water molecules inside the channel has been studied recently (9-11). It has been found that the charged groups in the conserved NPA and ar/R regions that dominate the energetics of water permeation in these regions can interrupt the hydrogen bond along the water chain and generate the electrostatic field to exclude proton transfer (9-13). Furthermore, very recently, the electrostatic environment of the water channel has been found to be able to regulate water permeability, using mutational analysis (14).However, the complex structure of biological channels and protein-water interactions often make further investigations of the mechanism of biological water channels very complicated. It has been well recognized that simple nanochannels can be used as model systems to exploit some of the primary behavior of the biological water channels. In 2001, Hummer et al. proposed that single-walled carbon nanotubes (SWNTs) can be designed as molecular channels for water (15)(16)(17)(18). They showed tha...

We designed a series of porous graphene as the separation membrane of H 2 /N 2 . The selectivity and permeability could be controlled by drilling various nanopores with different shapes and sizes. The mechanisms of hydrogen and nitrogen to permeate through the porous graphene are different. The small nanopore (pore-11) can only allow the hydrogen molecules to permeate due to the size restriction. In the systems of bigger nanopores (e.g., pore-13, pore-14, etc.), where the pore size is big enough to allow nitrogen molecules to permeate without any restriction, we observed more permeation events of nitrogen than that of hydrogen molecules. The reason is that the van der Waals interactions with the graphene membrane make the nitrogen molecules accumulate on the surface of graphene. When the pore size further increases, the flow of hydrogen molecules exhibits the linear dependence on the pore area, while there is no obvious correlation between the flow of nitrogen molecules and the pore area.